ViewGene
Locus Name:
GeneID:
Location:

GeneID:2917
TrivialName: PA14_17120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17120
PAO1 Ortholog Locus:PA3651
Sequence Length:816
Protein Length:271
Start: 1467113
Stop: 1467928
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07039.1|AE004785_3 (AE004785) phosphatidate cytidylyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 271/271 (100%), Positives = 271/271 (100%)
Sequence:
ATGCTGAAACAACGGATCATCACGGCGCTGGTGCTCCTGCCCATCGCGCTGGGTGGTTTTTTCCTTCTCGAA
GGGGCGTTCTTCGCCCTGTTCATCGGCGCGGTGGTGAGCCTGGGGGCCTGGGAATGGGCACGCCTGGCCGGC
TATGAACAGCAGTTCGGCCGCGTTGCCTACGCGGCGACGGTCGCCGTACTGATGGTCGCTCTCTACCATCTG
CCGCAGCTTGCCGGAGCCGTGCTGCTGCTGGCGTTGGTCTGGTGGACGCTGGCCACTGTGCTGGTGCTCACC
TACCCGGAAAGCGTCGGCTACTGGGGCGGACGCTGGCGCCGCCTGGGCATGGGCCTGCTGATCCTGTTGCCG
GCCTGGCAGGGGCTGGTCCTGCTCAAGCAGTGGCCGCTGGCCAATGGCCTGATCATCGCCGTGATGGTGCTG
GTCTGGGGCGCGGATATCGGCGCCTACTTCTCCGGCAAGGCCTTCGGCAAGCGCAAGCTGGCGCCGCGGGTC
AGCCCCGGCAAGAGCTGGGAAGGCGTTTACGGCGGCCTGGCGGCCAGCCTGGCGATCACCCTGGCGGTCGGC
CTCTACCGCGGCTGGTCCCTCGGCGCGCTGCTCCTGGCCCTGCTCGGCGCGGCGCTGGTGGTGTTCGTCTCG
ATCGTCGGCGACCTCACCGAAAGCATGTTCAAGCGCCAGTCCGGAATCAAGGACAGCAGCAACCTGCTGCCC
GGCCACGGTGGCGTGCTGGATCGCATCGACAGCCTGACGGCAGCCATCCCGGTATTCGCGGCCCTGCTCTGG
GCCGCCGGCTGGGGTGCGCCATGA
Translation:
MLKQRIITALVLLPIALGGFFLLEGAFFALFIGAVVSLGAWEWARLAGYEQQFGRVAYAATVAVLMVALYHL
PQLAGAVLLLALVWWTLATVLVLTYPESVGYWGGRWRRLGMGLLILLPAWQGLVLLKQWPLANGLIIAVMVL
VWGADIGAYFSGKAFGKRKLAPRVSPGKSWEGVYGGLAASLAITLAVGLYRGWSLGALLLALLGAALVVFVS
IVGDLTESMFKRQSGIKDSSNLLPGHGGVLDRIDSLTAAIPVFAALLWAAGWGAP*
AnnotationID:2925GeneID:2917
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 05:05:49
Gene Name:cdsA
Confidence Code:2
GeneProduct:phosphatidate cytidylyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:CDP-diglyceride synthetase
Functional Category Confidence Code:5
COGs:COG0575,pfam01148
Secondary Functional Category(ies):
EC Number:2.7.7.41
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55059.1| (AE016861) phosphatidate cytidylyltransferase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 271

 Score =  401 bits (1031), Expect = e-111
 Identities = 197/269 (73%), Positives = 227/269 (84%)

>gb|AAM86679.1|AE013913_9 (AE013913) CDP-diglyceride synthetase [Yersinia pestis KIM]
          Length = 282

 Score =  234 bits (596), Expect = 5e-61
 Identities = 130/279 (46%), Positives = 173/279 (62%), Gaps = 17/279 (6%)

>gb|AAN78704.1|AE016755_204 (AE016755) Phosphatidate cytidylyltransferase [Escherichia coli
           CFT073]
          Length = 285

 Score =  223 bits (568), Expect = 9e-58
 Identities = 122/279 (43%), Positives = 172/279 (61%), Gaps = 17/279 (6%)






 
Structural Features:
COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]
CD-Length = 265 residues,  98.9% aligned
Score =  143 bits (361), Expect = 5e-35
Identities = 92/268 (34%), Positives = 133/268 (49%), Gaps = 10/268 (3%)

pfam01148, CTP_transf_1, Cytidylyltransferase family.
CD-Length = 259 residues,  99.2% aligned
Score =  135 bits (342), Expect = 9e-33
Identities = 101/274 (36%), Positives = 131/274 (47%), Gaps = 29/274 (10%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5837




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22979




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31892




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2917_cdd.html


    		




 
URL:

















    ReferenceID:34218




  
Author/Investigator(s):
        Nampoothiri KM, Hoischen C, Bathe B, Mockel B, Pfefferle W, Krumbach K, Sahm H, Eggeling L.





  
Title:
        Expression of genes of lipid synthesis and altered lipid composition modulates L-glutamate efflux of Corynebacterium glutamicum.




  
PubMed:
        11831479


MedLine:
        




    
Source:
Appl Microbiol Biotechnol. 2002 Jan;58(1):89-96.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11831479









           
Homologs By Global Alignment 

           

       



     
Gene ID:2917
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4719
                           PA3651_tr
                           translation of PA3651
                           271
                           99.99
                           99.99
                           0
                           1386.0
     

     
     
135551
                           gb|AAG07039.1|AE004785_3
                           (AE004785) phosphatidate cytidylyltransferase [Pseudomonas aeruginosa PAO1]
                           271
                           99.99
                           99.99
                           0
                           1386.0
     

     
     
135552
                           dbj|BAA09437.1|
                           (D50811) CDP-diglyceride synthetase [Pseudomonas aeruginosa]
                           271
                           98.89
                           98.89
                           0
                           1359.0
     

     
     
135554
                           gb|AAN67217.1|AE016348_9
                           (AE016779) phosphatidate cytidylyltransferase [Pseudomonas putida KT2440]
                           271
                           73.80
                           81.91
                           0
                           1010.0
     

     
     
135553
                           gb|AAO55059.1|
                           (AE016861) phosphatidate cytidylyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           271
                           72.69
                           83.76
                           0
                           1029.0
     

     






      

          
GC ORFID: 45919How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3651Glimmer Score: 

          
Start: 3486824Stop: 3486009

          
Length: 816


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3651 translation of PA3651Homolog Bit Score 538.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4624 (ORF: BLASTX 400.0), t_PA3651 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAAACAACGGATCATCACGGCGCTGGTGCTCCTGCCCATCGCGCTGGGTGGTTTTTTCCTTCTCGAA 
GGGGCGTTCTTCGCCCTGTTCATCGGCGCGGTGGTGAGCCTGGGGGCCTGGGAATGGGCACGCCTGGCCGGC 
TATGAACAGCAGTTCGGCCGCGTTGCCTACGCGGCGACGGTCGCCGTACTGATGGTCGCTCTCTACCATCTG 
CCGCAGCTTGCCGGAGCCGTGCTGCTGCTGGCGTTGGTCTGGTGGACGCTGGCCACTGTGCTGGTGCTCACC 
TACCCGGAAAGCGTCGGCTACTGGGGCGGACGCTGGCGCCGCCTGGGCATGGGCCTGCTGATCCTGTTGCCG 
GCCTGGCAGGGGCTGGTCCTGCTCAAGCAGTGGCCGCTGGCCAATGGCCTGATCATCGCCGTGATGGTGCTG 
GTCTGGGGCGCGGATATCGGCGCCTACTTCTCCGGCAAGGCCTTCGGCAAGCGCAAGCTGGCGCCGCGGGTC 
AGCCCCGGCAAGAGCTGGGAAGGCGTTTACGGCGGCCTGGCGGCCAGCCTGGCGATCACCCTGGCGGTCGGC 
CTCTACCGCGGCTGGTCCCTCGGCGCGCTGCTCCTGGCCCTGCTCGGCGCGGCGCTGGTGGTGTTCGTCTCG 
ATCGTCGGCGACCTCACCGAAAGCATGTTCAAGCGCCAGTCCGGAATCAAGGACAGCAGCAACCTGCTGCCC 
GGCCACGGTGGCGTGCTGGATCGCATCGACAGCCTGACGGCAGCCATCCCGGTATTCGCGGCCCTGCTCTGG 
GCCGCCGGCTGGGGTGCGCCATGA