ViewGene
Locus Name:
GeneID:
Location:

GeneID:2915
TrivialName: PA14_39660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39660
PAO1 Ortholog Locus:PA1921
Sequence Length:810
Protein Length:269
Start: 3535009
Stop: 3535818
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05309.1|AE004618_3 (AE004618) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 269/269 (100%), Positives = 269/269 (100%)
Sequence:
ATGACCGCAACCGAGCAGATCATGGCGCTCCTCGAACGCTGGGACCGCCAGCAGGAAGGCTACATTCGCCAG
CGCGAGGAGCGCTACGAGGCGATGTTCCAGTTGCTCGAAGACCTCTTCGGCCGCGACGGGCGCTTCACCGCC
ATCGACGCCGCCTGCGGCCCGGGCTCCCTCGGCCGGCGCCTGCTCGAACGCTTCCCGGCGGCGCGGGTGGTG
GCGCTGGACGCCGACGTCATGCTGCTGGAGATCGCGCGTACGGCGCTGGCCGGCTTCGCCGAACGGGTCCGC
GTGGTGGAGTGCGACCTCACCGATCCAGGCTGGACCGAACGGGTCGCCGAAGCGCGCGAGTCCCTCGCCGGC
GAACGGCCCGCGGCGCTGCTCTCTTCCACCGCGTTGCACTGGCTGTCGCCCGCCGAACTCGCCGGGTTCTAC
GCCCAGGCCGGCGAACTGCTCGCCCCCGGCGGCGTGCTGCTGAACGCCGACCACATGCGCTACGACCGACGC
TGGCCGGGACTCGCGGAATTGTCCCGGAAGCACCGCGAGCGGGTCCTCCAGGCGTCCGTGGCCAGCGGCGCG
GACAGTtgGGAAGACTGGTGGCAACGCGCCGCGCAGATCCCCCGGctgGCCCCGCTGAAGGCGCAGCGCGAC
GCCCATTTCGCGCGGCGCCCGCTCAGGCGCGCCAGCGAAGACGAAGACTGCTCGCTCGATTTCCATCTCGCC
GCCCTGCGCCAGGCGGGCTTCGCCGAGGCCGCCACGGTCTGGCAGCAGTTGGACAACTACGTGGTCTTCGCC
CGCCTCGCCCAGGCCTGA
Translation:
MTATEQIMALLERWDRQQEGYIRQREERYEAMFQLLEDLFGRDGRFTAIDAACGPGSLGRRLLERFPAARVV
ALDADVMLLEIARTALAGFAERVRVVECDLTDPGWTERVAEARESLAGERPAALLSSTALHWLSPAELAGFY
AQAGELLAPGGVLLNADHMRYDRRWPGLAELSRKHRERVLQASVASGADSWEDWWQRAAQIPRLAPLKAQRD
AHFARRPLRRASEDEDCSLDFHLAALRQAGFAEAATVWQQLDNYVVFARLAQA*
AnnotationID:2923GeneID:2915
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 11:11:00
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1921
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5833




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22975




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37025




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2915_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2915
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4717
                           PA1921_tr
                           translation of PA1921
                           269
                           99.99
                           99.99
                           0
                           1386.0
     

     
     
135546
                           gb|AAG05309.1|AE004618_3
                           (AE004618) hypothetical protein PA1921 [Pseudomonas aeruginosa PAO1]
                           269
                           99.99
                           99.99
                           0
                           1386.0
     

     






      

          
GC ORFID: 45917How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1921Glimmer Score: 

          
Start: 1418902Stop: 1418093

          
Length: 810


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1921 translation of PA1921Homolog Bit Score 538.0

          
Other Homologs:  t_PA1921 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCAACCGAGCAGATCATGGCGCTCCTCGAACGCTGGGACCGCCAGCAGGAAGGCTACATTCGCCAG 
CGCGAGGAGCGCTACGAGGCGATGTTCCAGTTGCTCGAAGACCTCTTCGGCCGCGACGGGCGCTTCACCGCC 
ATCGACGCCGCCTGCGGCCCGGGCTCCCTCGGCCGGCGCCTGCTCGAACGCTTCCCGGCGGCGCGGGTGGTG 
GCGCTGGACGCCGACGTCATGCTGCTGGAGATCGCGCGTACGGCGCTGGCCGGCTTCGCCGAACGGGTCCGC 
GTGGTGGAGTGCGACCTCACCGATCCAGGCTGGACCGAACGGGTCGCCGAAGCGCGCGAGTCCCTCGCCGGC 
GAACGGCCCGCGGCGCTGCTCTCTTCCACCGCGTTGCACTGGCTGTCGCCCGCCGAACTCGCCGGGTTCTAC 
GCCCAGGCCGGCGAACTGCTCGCCCCCGGCGGCGTGCTGCTGAACGCCGACCACATGCGCTACGACCGACGC 
TGGCCGGGACTCGCGGAATTGTCCCGGAAGCACCGCGAGCGGGTCCTCCAGGCGTCCGTGGCCAGCGGCGCG 
GACAGTtgGGAAGACTGGTGGCAACGCGCCGCGCAGATCCCCCGGctgGCCCCGCTGAAGGCGCAGCGCGAC 
GCCCATTTCGCGCGGCGCCCGCTCAGGCGCGCCAGCGAAGACGAAGACTGCTCGCTCGATTTCCATCTCGCC 
GCCCTGCGCCAGGCGGGCTTCGCCGAGGCCGCCACGGTCTGGCAGCAGTTGGACAACTACGTGGTCTTCGCC 
CGCCTCGCCCAGGCCTGA