ViewGene
Locus Name:
GeneID:
Location:

GeneID:2913
TrivialName: PA14_45250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45250
PAO1 Ortholog Locus:PA1484
Sequence Length:807
Protein Length:268
Start: 4034269
Stop: 4035075
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04873.1|AE004577_8 (AE004577) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 268/268 (100%), Positives = 268/268 (100%)
Sequence:
ATGCACACCCTGTTCCGGGACATCGGCATGCACGCCAGCCTGGGCCGCGCCATCGAACAGATCGGCGGCAAC
CGCTTCTGGAAGCAATTGATTCTGCTGCTGCGCCAGCACCTGCCGTTCGACAACGCCCTGGCGATCTTCTAC
CCCGCCAACGGCGTGCCGGTGGCCCTGGAGGAATACGACGCCGAACCGCACGCCGGGCCGGCCTCGATGCTC
GCCTACCTGAACGGGCTGTACCTGCTCGACCCCTTCTACCAGGCTTGCCGGGAAGGCCTGGCCAGCGGCCTG
TACCGCCTCGAGGAGATCGCCCCGGACCATTTCCGGCAGAGCGAGTACTACCTCAGCTACTTCCACGACAAC
GTGCTGGAGGACGAGGTGCAGTTCATCCTCCAGGTACCCGGCCAGGGCGCGCTGTCGCTGTCGTTGGGCATG
CAGAGGATGTTCGCCGACGAGGAATGCGGGATGCTCGGGCTGCTCTCGAGCTGGGTCCTGGCGCTGATGCAG
CAGCACTGGCAGCAGCGCAGCCAGCGCCTGTTGCCGGCCGCACCGCAGGAAGAGATGGCCACGCAGATACGC
GACGCCCTCAGCCACTTCGGCGCCAGCGTGCTATCGGAACGGGAACTGGAGATCGCTCGCCTGATCCTTCGC
GGCTACTCGTCGAAGGCCATGGCCGAGCGCCTGGCGATCTCGCCGGAGACGATCAAGGTCCATCGGCGCCAC
CTGTACGCCAAGCTGGACATTTCCTCGCAACCGGAACTGTTCTCGCTGTTCATCCAGTCGCTCGGGCACGAC
CCGGAGAACCCCTAA
Translation:
MHTLFRDIGMHASLGRAIEQIGGNRFWKQLILLLRQHLPFDNALAIFYPANGVPVALEEYDAEPHAGPASML
AYLNGLYLLDPFYQACREGLASGLYRLEEIAPDHFRQSEYYLSYFHDNVLEDEVQFILQVPGQGALSLSLGM
QRMFADEECGMLGLLSSWVLALMQQHWQQRSQRLLPAAPQEEMATQIRDALSHFGASVLSERELEIARLILR
GYSSKAMAERLAISPETIKVHRRHLYAKLDISSQPELFSLFIQSLGHDPENP*
AnnotationID:2921GeneID:2913
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 18:06:23
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1484
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68195.1|AE016452_8 (AE016783) transcriptional regulator, LuxR family [Pseudomonas
           putida KT2440]
          Length = 280

 Score =  190 bits (483), Expect = 6e-48
 Identities = 113/251 (45%), Positives = 156/251 (62%), Gaps = 7/251 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5829




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22971




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37347




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2913_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2913
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4714
                           PA1484_tr
                           translation of PA1484
                           268
                           99.99
                           99.99
                           0
                           1386.0
     

     
     
135541
                           gb|AAG04873.1|AE004577_8
                           (AE004577) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           268
                           99.99
                           99.99
                           0
                           1386.0
     

     
     
4715
                           PA3599_tr
                           translation of PA3599
                           279
                           42.65
                           59.49
                           29
                           531.0
     

     
     
135542
                           gb|AAG06987.1|AE004780_6
                           (AE004780) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           279
                           42.65
                           59.49
                           29
                           531.0
     

     
     
135543
                           gb|AAN68195.1|AE016452_8
                           (AE016783) transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
                           297
                           40.40
                           53.87
                           46
                           486.0
     

     






      

          
GC ORFID: 45915How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1484Glimmer Score: 

          
Start: 919640Stop: 918834

          
Length: 807


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1484 translation of PA1484Homolog Bit Score 538.0

          
Other Homologs:  t_PA3599 (ORF: BLASTX 205.0), t_PA1484 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACACCCTGTTCCGGGACATCGGCATGCACGCCAGCCTGGGCCGCGCCATCGAACAGATCGGCGGCAAC 
CGCTTCTGGAAGCAATTGATTCTGCTGCTGCGCCAGCACCTGCCGTTCGACAACGCCCTGGCGATCTTCTAC 
CCCGCCAACGGCGTGCCGGTGGCCCTGGAGGAATACGACGCCGAACCGCACGCCGGGCCGGCCTCGATGCTC 
GCCTACCTGAACGGGCTGTACCTGCTCGACCCCTTCTACCAGGCTTGCCGGGAAGGCCTGGCCAGCGGCCTG 
TACCGCCTCGAGGAGATCGCCCCGGACCATTTCCGGCAGAGCGAGTACTACCTCAGCTACTTCCACGACAAC 
GTGCTGGAGGACGAGGTGCAGTTCATCCTCCAGGTACCCGGCCAGGGCGCGCTGTCGCTGTCGTTGGGCATG 
CAGAGGATGTTCGCCGACGAGGAATGCGGGATGCTCGGGCTGCTCTCGAGCTGGGTCCTGGCGCTGATGCAG 
CAGCACTGGCAGCAGCGCAGCCAGCGCCTGTTGCCGGCCGCACCGCAGGAAGAGATGGCCACGCAGATACGC 
GACGCCCTCAGCCACTTCGGCGCCAGCGTGCTATCGGAACGGGAACTGGAGATCGCTCGCCTGATCCTTCGC 
GGCTACTCGTCGAAGGCCATGGCCGAGCGCCTGGCGATCTCGCCGGAGACGATCAAGGTCCATCGGCGCCAC 
CTGTACGCCAAGCTGGACATTTCCTCGCAACCGGAACTGTTCTCGCTGTTCATCCAGTCGCTCGGGCACGAC 
CCGGAGAACCCCTAA