ViewGene
Locus Name:
GeneID:
Location:

GeneID:2911
TrivialName: PA14_13840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13840
PAO1 Ortholog Locus:PA3871
Sequence Length:819
Protein Length:272
Start: 1190432
Stop: 1191250
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07258.1|AE004804_6 (AE004804) probable peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas aeruginosa PAO1]
Identities = 268/272 (98%), Positives = 270/272 (99%)
Sequence:
ATGAGTTGCTCCCACTACGAAGAACGCGTCGAGAAGGTCGAACTGCCGCAACTGAAGGTCAACGGCGTGGCC
ATCGGCGAAGACCTGCTGGCCCGCGAGCTGCAATACCACCCGGCGGACAGCTACGCGCTGGCGCTGGAGGCC
GCCTGCCGTGCGCTGATCGTCCGCCAGTTGCTCCTGCAACGGGCCGACGCGCTGGGCATCGAGGCCCGCTGC
GAAGACGGCGAGACGCCGGAGGAAGCGCGCATCCGCCAATTGCTGGAGGAAGAGGTGCAGGTCCCGGAAGCC
GACGAAGACGCCTGCCGGACCTGGTACGCGGCCAATCCGGGGCGCCTGCTCGGCCCCTGGCGCCTGCAATTG
CGCCATGTGCTGCTGGCCTGCGCGCCGGACGACCTGGAAGGCCGCGAGACGGCGCGCAAGCAGGCCGCGGAG
CTGCTCGACGAGTTGCGCGGGCATCCCGAGCGCTTCGTCGACCTGGCCCGGCGTTTCTCCGCCTGTCCGTCG
AAGGAGGCGGGCGGCGACCTcgGCTGGATCGAGCCGGGGCAGACCGTCCCCGAATTCGAGAAGCGCCTGCTG
CGCCGCGCGCCCGGGCTGCTCGAGCATCCGCTGGAAAGCCGCTATGGCCTGCATGTGGTGGAACTGCTGGGG
CGCGAGGGCGGCGAGCCGCTCGACTTCGACGCGGCCCGCGCGCAAATCGCCGCGCACCTGCAAGCGCAAGTG
TTGCAGCGGGCCGTGGGGCAGTACATCGGCGTGCTGGCGGGAGACGCCTGCATCGAGGGCTTCGCCTTCGGG
GGCGCGGATGGGGCGCTGGTGCAATAG
Translation:
MSCSHYEERVEKVELPQLKVNGVAIGEDLLARELQYHPADSYALALEAACRALIVRQLLLQRADALGIEARC
EDGETPEEARIRQLLEEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLLACAPDDLEGRETARKQAAE
LLDELRGHPERFVDLARRFSACPSKEAGGDLGWIEPGQTVPEFEKRLLRRAPGLLEHPLESRYGLHVVELLG
REGGEPLDFDAARAQIAAHLQAQVLQRAVGQYIGVLAGDACIEGFAFGGADGALVQ*
AnnotationID:2919GeneID:2911
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 09:09:01
Gene Name:
Confidence Code:3
GeneProduct:putative peptidyl-prolyl cis-trans isomerase
Cell Localization:()
Synonyms:PA3871
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00639
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL54196.1| (AE009728) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE C [Brucella
           melitensis 16M]
          Length = 271

 Score =  181 bits (458), Expect = 5e-45
 Identities = 109/258 (42%), Positives = 143/258 (55%), Gaps = 7/258 (2%)

>gb|AAP86023.1| (AY305378) probable peptidyl-prolyl cis-trans isomerase [Ralstonia
           eutropha]
          Length = 250

 Score =  140 bits (353), Expect = 8e-33
 Identities = 99/255 (38%), Positives = 131/255 (51%), Gaps = 11/255 (4%)








 
Structural Features:
pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamases increase 
the rate of protein folding by catalysing the interconversion 
of cis-proline and trans-proline.
CD-Length = 90 residues, 100.0% aligned
Score = 75.7 bits (186), Expect = 1e-14
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5825




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22967




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31693




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2911_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2911
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4712
                           PA3871_tr
                           translation of PA3871
                           272
                           98.52
                           99.26
                           0
                           1388.0
     

     
     
135519
                           gb|AAG07258.1|AE004804_6
                           (AE004804) probable peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas aeruginosa PAO1]
                           272
                           98.52
                           99.26
                           0
                           1388.0
     

     
     
135520
                           emb|CAA75544.1|
                           (Y15252) NifM protein [Pseudomonas aeruginosa]
                           272
                           90.44
                           91.17
                           22
                           1272.0
     

     
     
135521
                           gb|AAL54196.1|
                           (AE009728) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE C [Brucella melitensis 16M]
                           287
                           38.32
                           50.52
                           31
                           457.0
     

     
     
135522
                           gb|AAN33495.1|AE014530_4
                           (AE014530) peptidyl-prolyl cis-trans isomerase, putative [Brucella suis 1330]
                           313
                           36.42
                           47.92
                           43
                           457.0
     

     






      

          
GC ORFID: 45913How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3871Glimmer Score: 

          
Start: 3763506Stop: 3762688

          
Length: 819


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3871 translation of PA3871Homolog Bit Score 539.0

          
Other Homologs:  t_PA3871 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTGCTCCCACTACGAAGAACGCGTCGAGAAGGTCGAACTGCCGCAACTGAAGGTCAACGGCGTGGCC 
ATCGGCGAAGACCTGCTGGCCCGCGAGCTGCAATACCACCCGGCGGACAGCTACGCGCTGGCGCTGGAGGCC 
GCCTGCCGTGCGCTGATCGTCCGCCAGTTGCTCCTGCAACGGGCCGACGCGCTGGGCATCGAGGCCCGCTGC 
GAAGACGGCGAGACGCCGGAGGAAGCGCGCATCCGCCAATTGCTGGAGGAAGAGGTGCAGGTCCCGGAAGCC 
GACGAAGACGCCTGCCGGACCTGGTACGCGGCCAATCCGGGGCGCCTGCTCGGCCCCTGGCGCCTGCAATTG 
CGCCATGTGCTGCTGGCCTGCGCGCCGGACGACCTGGAAGGCCGCGAGACGGCGCGCAAGCAGGCCGCGGAG 
CTGCTCGACGAGTTGCGCGGGCATCCCGAGCGCTTCGTCGACCTGGCCCGGCGTTTCTCCGCCTGTCCGTCG 
AAGGAGGCGGGCGGCGACCTcgGCTGGATCGAGCCGGGGCAGACCGTCCCCGAATTCGAGAAGCGCCTGCTG 
CGCCGCGCGCCCGGGCTGCTCGAGCATCCGCTGGAAAGCCGCTATGGCCTGCATGTGGTGGAACTGCTGGGG 
CGCGAGGGCGGCGAGCCGCTCGACTTCGACGCGGCCCGCGCGCAAATCGCCGCGCACCTGCAAGCGCAAGTG 
TTGCAGCGGGCCGTGGGGCAGTACATCGGCGTGCTGGCGGGAGACGCCTGCATCGAGGGCTTCGCCTTCGGG 
GGCGCGGATGGGGCGCTGGTGCAATAG