ViewGene

Locus Name:
GeneID:
Location:

GeneID:291
TrivialName: PA14_71260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71260
PAO1 Ortholog Locus:PA5398
Sequence Length:2061
Protein Length:686
Start: 6348797
Stop: 6350857
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08783.1|AE004952_5 (AE004952) probable FMN oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 685/686 (99%), Positives = 686/686 (100%)
Sequence:
ATGGCCTTCGAAGCAATGTTCCAGCCGATCCAGATCGGCAAGCTGACCATCCGCAACCGCGTGCTCTCCACC
GCCCACGCCGAGGTCTACGCCACCGACGGCGGGATGACCACCGAGCGCTACGTGAAGTACTACGAGGAAAAG
GCCAAGGGCGGCATCGGCCTGGCCATCTGTGGCGGCTCCTCAGTGGTCGCCATCGACAGCCCGCAGCAGTGG
TGGAGTTCGGTGAACCTGTCCACCGACCGGATCATCCCGCACTTCCAGAACCTGGCGGACGCCATGCACAAG
CACGGCGCCAAGATCATGATCCAGATTACCCACATGGGGCGCCGTTCGCGCTGGGACGGCTACCACTGGCCG
ACCCTGATGTCGCCGTCGGGTATCCGCGAGCCGGTGCACCGCGCCACCTGCAAGACCATCGAGGTGGAGGAG
ATCTGGCGGGTCATCGGCAACTACGCGCAGGCCGCCCGCCGCGCCAAGGAAGGCGGCCTGGACGGCGTCGAG
CTGTCCGCCGTGCACCAGCACATGATCGACCAGTTCTGGAGCCCACGGGTCAACAAGCGCACCGACGAATGG
GGCGGTAGCTTCGAGGGGCGCATGAAGTTCGGCCTCGAGGTGCTCAAGGCGGTGCGCGCCGAGGTCGGCGAG
GACTTCTGCGTCGGCATGCGCATCTGCGGCGACGAGTTCCACCCGGACGGCCTGTCCCACGAGGACATGAAG
CAGATCGCCAAGTACTACAGCGATACCGGCATGCTCGACTTCATCGGCGTGGTCGGCTCCGGCTGCGACACC
CACAATACCCTGGCCAACGTCATCCCCAACATGACCTTCCCGCCGGAGCCGTTCCTGCACCTGGCGGCCGGC
ATCAAGGAAGTGGTCGACGTGCCGGTGCTGCACGCGCAGAACATCAAGGACCCGAACCAGGCCACGCGCATC
CTCGAAGGCGGCTACGTGGACATGGTCGGCATGACTCGCGCGCACATCGCCGACCCGCACCTGATCGCCAAG
ATCAAGATGGGCCAGGTCGACCAGATCAAGCAGTGCGTCGGCGCCAACTACTGCATCGACCGCCAGTACCAG
GGCCTGGACGTGCTGTGCATCCAGAACGCCGCGACCTCCCGCGAATACATGGGCGTGCCGCACATCATCGAG
AAGTCCGCCGGACCGAAGCGCAAGGTGGTGGTGGTCGGCGGCGGGCCGGCCGGGATGGAAGCGGCCCGCGTG
GCGGCCGAGCGCGGCCACGACGTGACCCTGTTCGAGAAGAAGGAGCAGCTCGGCGGCCAGATCACCACCGCC
GCCAAGGCGCCGCAACGCGACCAGATCGCCGGCATCACCCGTTGGTACCAACTGGAGCTGGCACGCCTGGGC
ATCGACCTGCGCCTGGGCACCGCGGCCGACCCCGAGACCATCCTCGACCTGCGCCCGGACGTGGTGGTGCTG
GCCAACGGCGGACATCCGTTCCTCGAGCAGAACGAACACTGGGGCGCCGCCGACGGCCTCGTGGTGAGCAGC
TGGGACGTGCTCGACGGCACGGTCGAGCCAGGCAAGAACGTGCTGGTCTACGACACCATCTGCGAGTTCAGC
GGCATGTCGGTGGCGGACTTCCTCGCCGACAAGGGCGCCCAGGTGGAGATCGTCACCGACGACATCAAGCCG
GGCGTGGCCATAGGCGGCACCACCTTCCCCACCTACTACCGCAGCATGTATCCCAAGGAAGTGATCATGACC
GGCGACCTGATGCTGGAGAAGGTCTACCGCGAGGGCGACAAGCTGGTGGCGGTGCTGGAGAACGAATACACC
GGCGCGCGGGAAGAGCGGGTGGTCGACCAGGTGGTGGTGGAAAACGGCGTGCGCCCCGACGAGAGCCTCTAC
TACGCGCTCAAGCAGGGCTCGCGGAACAAGGGCCAGATCGACGTCGAGGCGCTGTTCGCGATCCAGCCGCAG
CCCTGCCTCAGCCAGCCCGGAGAAGGCTACCTGCTGTTCCGCATCGGCGACTGCGTGGCCCAGCGCAACACC
CATGCGGCGATCTATGACGCGCTGCGCTTGTGCAAGGATTTCTAA
Translation:
MAFEAMFQPIQIGKLTIRNRVLSTAHAEVYATDGGMTTERYVKYYEEKAKGGIGLAICGGSSVVAIDSPQQW
WSSVNLSTDRIIPHFQNLADAMHKHGAKIMIQITHMGRRSRWDGYHWPTLMSPSGIREPVHRATCKTIEVEE
IWRVIGNYAQAARRAKEGGLDGVELSAVHQHMIDQFWSPRVNKRTDEWGGSFEGRMKFGLEVLKAVRAEVGE
DFCVGMRICGDEFHPDGLSHEDMKQIAKYYSDTGMLDFIGVVGSGCDTHNTLANVIPNMTFPPEPFLHLAAG
IKEVVDVPVLHAQNIKDPNQATRILEGGYVDMVGMTRAHIADPHLIAKIKMGQVDQIKQCVGANYCIDRQYQ
GLDVLCIQNAATSREYMGVPHIIEKSAGPKRKVVVVGGGPAGMEAARVAAERGHDVTLFEKKEQLGGQITTA
AKAPQRDQIAGITRWYQLELARLGIDLRLGTAADPETILDLRPDVVVLANGGHPFLEQNEHWGAADGLVVSS
WDVLDGTVEPGKNVLVYDTICEFSGMSVADFLADKGAQVEIVTDDIKPGVAIGGTTFPTYYRSMYPKEVIMT
GDLMLEKVYREGDKLVAVLENEYTGAREERVVDQVVVENGVRPDESLYYALKQGSRNKGQIDVEALFAIQPQ
PCLSQPGEGYLLFRIGDCVAQRNTHAAIYDALRLCKDF*
AnnotationID:301GeneID:291
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 09:09:54
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, FMN-binding
Cell Localization:()
Synonyms:PA5398
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative NADH:flavin oxidoreductase/NADH oxidase family
Functional Category Confidence Code:5
COGs:COG1902,pfam00724
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65941.1|AE016222_3 (AE016775) oxidoreductase, FMN-binding [Pseudomonas putida KT2440]
          Length = 686

 Score = 1316 bits (3406), Expect = 0.0
 Identities = 639/686 (93%), Positives = 666/686 (97%)

>gb|AAO53940.1| (AE016857) NADH:flavin oxidoreductase/NADH oxidase family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 686

 Score = 1305 bits (3378), Expect = 0.0
 Identities = 631/686 (91%), Positives = 660/686 (96%)

>emb|CAD17209.1| (AL646076) PROBABLE STACHYDRINE UTILIZATION OXIDOREDUCTASE PROTEIN
           [Ralstonia solanacearum]
          Length = 687

 Score =  920 bits (2379), Expect = 0.0
 Identities = 435/688 (63%), Positives = 541/688 (78%), Gaps = 3/688 (0%)
Structural Features:
COG1902, NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family 
[Energy production and conversion]
CD-Length = 363 residues, 100.0% aligned
Score =  368 bits (946), Expect = 1e-102
Identities = 143/372 (38%), Positives = 207/372 (55%), Gaps = 13/372 (3%)

pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase family.
CD-Length = 335 residues, 100.0% aligned
Score =  233 bits (595), Expect = 6e-62
Identities = 114/346 (32%), Positives = 172/346 (49%), Gaps = 17/346 (4%)


Genomic Context:
Comment:
ReferenceID:585
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17727
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34700
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:291_cdd.html
URL:
Homologs By Global Alignment
Gene ID:291

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
477 PA5398_tr translation of PA5398 686 99.85 99.99 0 3614.0
24771 gb|AAG08783.1|AE004952_5 (AE004952) probable FMN oxidoreductase [Pseudomonas aeruginosa PAO1] 686 99.85 99.99 0 3614.0
24772 gb|AAN65941.1|AE016222_3 (AE016775) oxidoreductase, FMN-binding [Pseudomonas putida KT2440] 686 93.14 97.08 0 3406.0
24773 gb|AAO53940.1| (AE016857) NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas syringae pv. tomato str. DC3000] 686 91.98 96.20 0 3378.0
24774 emb|CAD17209.1| (AL646076) PROBABLE STACHYDRINE UTILIZATION OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum] 688 63.22 78.63 3 2385.0
GC ORFID: 43293How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5398Glimmer Score:
Start: 5612486Stop: 5614546
Length: 2061
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5398 translation of PA5398Homolog Bit Score 1396.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6581 (ORF: BLASTX 1307.0), t_PA5398 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCTTCGAAGCAATGTTCCAGCCGATCCAGATCGGCAAGCTGACCATCCGCAACCGCGTGCTCTCCACC
GCCCACGCCGAGGTCTACGCCACCGACGGCGGGATGACCACCGAGCGCTACGTGAAGTACTACGAGGAAAAG
GCCAAGGGCGGCATCGGCCTGGCCATCTGTGGCGGCTCCTCAGTGGTCGCCATCGACAGCCCGCAGCAGTGG
TGGAGTTCGGTGAACCTGTCCACCGACCGGATCATCCCGCACTTCCAGAACCTGGCGGACGCCATGCACAAG
CACGGCGCCAAGATCATGATCCAGATTACCCACATGGGGCGCCGTTCGCGCTGGGACGGCTACCACTGGCCG
ACCCTGATGTCGCCGTCGGGTATCCGCGAGCCGGTGCACCGCGCCACCTGCAAGACCATCGAGGTGGAGGAG
ATCTGGCGGGTCATCGGCAACTACGCGCAGGCCGCCCGCCGCGCCAAGGAAGGCGGCCTGGACGGCGTCGAG
CTGTCCGCCGTGCACCAGCACATGATCGACCAGTTCTGGAGCCCACGGGTCAACAAGCGCACCGACGAATGG
GGCGGTAGCTTCGAGGGGCGCATGAAGTTCGGCCTCGAGGTGCTCAAGGCGGTGCGCGCCGAGGTCGGCGAG
GACTTCTGCGTCGGCATGCGCATCTGCGGCGACGAGTTCCACCCGGACGGCCTGTCCCACGAGGACATGAAG
CAGATCGCCAAGTACTACAGCGATACCGGCATGCTCGACTTCATCGGCGTGGTCGGCTCCGGCTGCGACACC
CACAATACCCTGGCCAACGTCATCCCCAACATGACCTTCCCGCCGGAGCCGTTCCTGCACCTGGCGGCCGGC
ATCAAGGAAGTGGTCGACGTGCCGGTGCTGCACGCGCAGAACATCAAGGACCCGAACCAGGCCACGCGCATC
CTCGAAGGCGGCTACGTGGACATGGTCGGCATGACTCGCGCGCACATCGCCGACCCGCACCTGATCGCCAAG
ATCAAGATGGGCCAGGTCGACCAGATCAAGCAGTGCGTCGGCGCCAACTACTGCATCGACCGCCAGTACCAG
GGCCTGGACGTGCTGTGCATCCAGAACGCCGCGACCTCCCGCGAATACATGGGCGTGCCGCACATCATCGAG
AAGTCCGCCGGACCGAAGCGCAAGGTGGTGGTGGTCGGCGGCGGGCCGGCCGGGATGGAAGCGGCCCGCGTG
GCGGCCGAGCGCGGCCACGACGTGACCCTGTTCGAGAAGAAGGAGCAGCTCGGCGGCCAGATCACCACCGCC
GCCAAGGCGCCGCAACGCGACCAGATCGCCGGCATCACCCGTTGGTACCAACTGGAGCTGGCACGCCTGGGC
ATCGACCTGCGCCTGGGCACCGCGGCCGACCCCGAGACCATCCTCGACCTGCGCCCGGACGTGGTGGTGCTG
GCCAACGGCGGACATCCGTTCCTCGAGCAGAACGAACACTGGGGCGCCGCCGACGGCCTCGTGGTGAGCAGC
TGGGACGTGCTCGACGGCACGGTCGAGCCAGGCAAGAACGTGCTGGTCTACGACACCATCTGCGAGTTCAGC
GGCATGTCGGTGGCGGACTTCCTCGCCGACAAGGGCGCCCAGGTGGAGATCGTCACCGACGACATCAAGCCG
GGCGTGGCCATAGGCGGCACCACCTTCCCCACCTACTACCGCAGCATGTATCCCAAGGAAGTGATCATGACC
GGCGACCTGATGCTGGAGAAGGTCTACCGCGAGGGCGACAAGCTGGTGGCGGTGCTGGAGAACGAATACACC
GGCGCGCGGGAAGAGCGGGTGGTCGACCAGGTGGTGGTGGAAAACGGCGTGCGCCCCGACGAGAGCCTCTAC
TACGCGCTCAAGCAGGGCTCGCGGAACAAGGGCCAGATCGACGTCGAGGCGCTGTTCGCGATCCAGCCGCAG
CCCTGCCTCAGCCAGCCCGGAGAAGGCTACCTGCTGTTCCGCATCGGCGACTGCGTGGCCCAGCGCAACACC
CATGCGGCGATCTATGACGCGCTGCGCTTGTGCAAGGATTTCTAA