ViewGene
Locus Name:
GeneID:
Location:

GeneID:2909
TrivialName: PA14_46420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46420
PAO1 Ortholog Locus:PA1379
Sequence Length:834
Protein Length:277
Start: 4129186
Stop: 4130019
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04768.1|AE004567_7 (AE004567) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 277/277 (100%), Positives = 277/277 (100%)
Sequence:
ATGTCGTTTCGCAAGACCCTGTTGATCACCGGCGCCAGCAGCGGCTTCGGCCAGGCCCTGGCCCGCGAGGCC
CTGGATGCCGGTCACCGCGTGGTGGGCACGGTGCGCAGCGAGGAGGCCAGGAGCGCACTGGAAGCCGTGGCG
CCGGGCCAGGCCTTCGGCCGGCTGCTGGATGTCACCGACCTCGCCGCCATCGAGCCGACGGTCGCAGCCATC
GAGCGCGACATCGGTCCGCTGGACGTGCTGGTGAACAGTGCCGGCTATGGTCATGAAGGCATCCTCGAGGAG
TCGCCGCTGGCCGAGATGCGCCGGCAGTTCGAGGTCAACCTGTTCGGCGCGGTCGCGATGATCCAGGCCGTG
CTGCCCTACATGCGTCGGCGCCGCCGCGGTCATATCCTCAACATCACTTCCATGGGCGGCTACATCACCATG
CCCGGCATCGCCTACTACTGCGGCAGCAAGTTCGCCCTGGAAGGGGTTTCCGAAGCCTTGGGCAAGGAGGTG
GCCGGCCTCGGCATCGCCGTCACCGCCGTGGCCCCCGGCTCCTTCCGCACCGACTGGGCGGGCCGCTCGATG
GTCCGCAGCCCGCGCACCATCGCCGACTACGACGCGCTCTTCGACCCGGTCCGCCAGGCGCGCCAGGAAAAG
AGCGGCAAGCAACCGGGCGACCCGCGCAAGGCCGCGCGCGCCATGCTCCAGGCCATCGACGCGGAAAACCCG
CCGGCGCACCTGCTGCTGGGCAGCGATGCACTGGGGCTGGTGCGGCAGAAGCTGAAGGCGCTGGAGGAGGAA
ATCGCGGCGTGGGAAGAGGTCACGCGGTCGACGGATGGATGA
Translation:
MSFRKTLLITGASSGFGQALAREALDAGHRVVGTVRSEEARSALEAVAPGQAFGRLLDVTDLAAIEPTVAAI
ERDIGPLDVLVNSAGYGHEGILEESPLAEMRRQFEVNLFGAVAMIQAVLPYMRRRRRGHILNITSMGGYITM
PGIAYYCGSKFALEGVSEALGKEVAGLGIAVTAVAPGSFRTDWAGRSMVRSPRTIADYDALFDPVRQARQEK
SGKQPGDPRKAARAMLQAIDAENPPAHLLLGSDALGLVRQKLKALEEEIAAWEEVTRSTDG*
AnnotationID:2917GeneID:2909
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 21:09:36
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA1379
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0300,pfam00106,COG4221,COG1028
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB53269.1| (AL939104) putative oxidoreductase (putative secreted protein)
           [Streptomyces coelicolor A3(2)]
          Length = 282

 Score =  338 bits (867), Expect = 2e-92
 Identities = 166/273 (60%), Positives = 209/273 (76%)

>gb|AAK61715.1| (AY033994) oxygenase-like protein [Streptomyces aureofaciens]
          Length = 285

 Score =  206 bits (524), Expect = 1e-52
 Identities = 123/273 (45%), Positives = 158/273 (57%), Gaps = 8/273 (2%)






 
Structural Features:
COG0300, DltE, Short-chain dehydrogenases of various substrate specificities
CD-Length = 265 residues,  94.0% aligned
Score =  164 bits (417), Expect = 9e-42
Identities = 80/266 (30%), Positives = 117/266 (43%), Gaps = 25/266 (9%)

pfam00106, adh_short, short chain dehydrogenase. 
CD-Length = 247 residues,  93.9% aligned
Score =  153 bits (389), Expect = 2e-38
Identities = 82/236 (34%), Positives = 117/236 (49%), Gaps = 7/236 (2%)

COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity
CD-Length = 246 residues,  91.9% aligned
Score =  154 bits (390), Expect = 1e-38
Identities = 88/241 (36%), Positives = 121/241 (50%), Gaps = 16/241 (6%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  91.6% aligned
Score =  133 bits (334), Expect = 3e-32
Identities = 85/243 (34%), Positives = 120/243 (49%), Gaps = 21/243 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5821




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22963




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37401




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2909_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2909
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4710
                           PA1379_tr
                           translation of PA1379
                           277
                           99.99
                           99.99
                           0
                           1388.0
     

     
     
135495
                           gb|AAG04768.1|AE004567_7
                           (AE004567) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           277
                           99.99
                           99.99
                           0
                           1388.0
     

     
     
135496
                           emb|CAB53269.1|
                           (AL939104) putative oxidoreductase (putative secreted protein) [Streptomyces coelicolor A3(2)]
                           283
                           58.65
                           73.85
                           7
                           860.0
     

     
     
135498
                           gb|AAK61715.1|
                           (AY033994) oxygenase-like protein [Streptomyces aureofaciens]
                           297
                           44.44
                           56.22
                           32
                           541.0
     

     
     
135497
                           gb|AAK64835.1|
                           (AE007211) putative [Sinorhizobium meliloti]
                           282
                           43.26
                           59.57
                           8
                           553.0
     

     






      

          
GC ORFID: 45911How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1379Glimmer Score: 

          
Start: 824723Stop: 823890

          
Length: 834


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1379 translation of PA1379Homolog Bit Score 539.0

          
Other Homologs:  t_PA1379 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTTTCGCAAGACCCTGTTGATCACCGGCGCCAGCAGCGGCTTCGGCCAGGCCCTGGCCCGCGAGGCC 
CTGGATGCCGGTCACCGCGTGGTGGGCACGGTGCGCAGCGAGGAGGCCAGGAGCGCACTGGAAGCCGTGGCG 
CCGGGCCAGGCCTTCGGCCGGCTGCTGGATGTCACCGACCTCGCCGCCATCGAGCCGACGGTCGCAGCCATC 
GAGCGCGACATCGGTCCGCTGGACGTGCTGGTGAACAGTGCCGGCTATGGTCATGAAGGCATCCTCGAGGAG 
TCGCCGCTGGCCGAGATGCGCCGGCAGTTCGAGGTCAACCTGTTCGGCGCGGTCGCGATGATCCAGGCCGTG 
CTGCCCTACATGCGTCGGCGCCGCCGCGGTCATATCCTCAACATCACTTCCATGGGCGGCTACATCACCATG 
CCCGGCATCGCCTACTACTGCGGCAGCAAGTTCGCCCTGGAAGGGGTTTCCGAAGCCTTGGGCAAGGAGGTG 
GCCGGCCTCGGCATCGCCGTCACCGCCGTGGCCCCCGGCTCCTTCCGCACCGACTGGGCGGGCCGCTCGATG 
GTCCGCAGCCCGCGCACCATCGCCGACTACGACGCGCTCTTCGACCCGGTCCGCCAGGCGCGCCAGGAAAAG 
AGCGGCAAGCAACCGGGCGACCCGCGCAAGGCCGCGCGCGCCATGCTCCAGGCCATCGACGCGGAAAACCCG 
CCGGCGCACCTGCTGCTGGGCAGCGATGCACTGGGGCTGGTGCGGCAGAAGCTGAAGGCGCTGGAGGAGGAA 
ATCGCGGCGTGGGAAGAGGTCACGCGGTCGACGGATGGATGA