ViewGene
Locus Name:
GeneID:
Location:

GeneID:2907
TrivialName: PA14_03170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03170
PAO1 Ortholog Locus:PA0987
Sequence Length:840
Protein Length:279
Start: 280557
Stop: 279718
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04376.1|AE004531_13 (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 271/280 (96%), Positives = 274/280 (97%), Gaps = 1/280 (0%)
Sequence:
ATGCAGGCGCGAACTGGCATCTCCGAGCGTCGTGCCTGTCAGTTGATCGGGCTGTCCCGCTCGGTGTTGCGC
TACCAGCCGCGAGCCAGTGTGCAAAACGAGCTGCAAGCCCAACTGGTGGAACTGGCCCAAGAGCGCCGGCGC
TTTGGCTATCGCCGCCTGCACATCCTGCTGCGGCGTGCTGGCGTGCAGGTCAACCACAAGCGGATCTATCGC
CTGTACCGCGCTGCCGGCTTGATGGTGAAACGGCGGCGCCGCCGCCATGGCGTCGCGGTGGAGCGCGAACGT
CTGAGTTTGCCGAGCGCACCAAACCAGGTCTGGTCGATGGACTTCGTCTTCGATGCACTGAGCACCGGGCGG
CGGATCAAATGCCTGACGGTGGTCGATGACTTCACCAAGGAGTCGGTCGGCATCCTGGTGGAGCACGGTATC
AGCGGCTTTCGCGTCACACGGGCGCTGGACGAGATGGCGCGGTTTCGCGGCTACCCGAAAGCGAGCCGCACC
GACCAAGGGCCCGAGTTCACCGGCAAGGCACTCGATCAATGGGCCTATCAGCGCGACATCAAGCTGAAGCTG
ATTCAGCCTGGTAAGCCCACGCAGAATGCCTTCATCAAGTCGTTCAACGGTAAGTTCCGGGACGAATGCCTC
AGTGAGCACTGGTTCTATTCGCTGGCCGAAGCGAGAATCCGCATCGCGGCCTGGCGGCGGGATTACAACGAA
CACCGACCGCACAGCGCGATTGGCAATCTCACCCCGGCAGAATTTGCTGCAAGTTGGCGAACTCGCCAGCAG
CAGCTGAAGCAGGAAAAATTAATATCAACCCCAGGGCTTACTAACTAG
Translation:
MQARTGISERRACQLIGLSRSVLRYQPRASVQNELQAQLVELAQERRRFGYRRLHILLRRAGVQVNHKRIYR
LYRAAGLMVKRRRRRHGVAVERERLSLPSAPNQVWSMDFVFDALSTGRRIKCLTVVDDFTKESVGILVEHGI
SGFRVTRALDEMARFRGYPKASRTDQGPEFTGKALDQWAYQRDIKLKLIQPGKPTQNAFIKSFNGKFRDECL
SEHWFYSLAEARIRIAAWRRDYNEHRPHSAIGNLTPAEFAASWRTRQQQLKQEKLISTPGLTN*
AnnotationID:2915GeneID:2907
AnnotatorUID: danlee
Modification Date/Time: 2005-10-04 16:04:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0987
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00665, COG2801
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|17427840|emb|CAD14530.1|  ISRSO14-TRANSPOSASE ORFB PROTEIN [Ralstonia solanacearum]
gi|17549438|ref|NP_522778.1|  ISRSO14-TRANSPOSASE ORFB PROTEIN [Ralstonia solanacearum GMI1000]
     Length=275
     Score =  386 bits (992),  Expect = 4e-106
     Identities = 187/261 (71%), Positives = 219/261 (83%), Gaps = 1/261 (0%)

gi|71847665|gb|AAZ47161.1|  Integrase, catalytic region [Dechloromonas aromatica RCB]
gi|53730659|ref|ZP_00151442.2|  COG2801: Transposase and inactivated derivatives [Dechloromonas aromatica RCB]
     Length=276
     Score =  385 bits (989),  Expect = 8e-106
     Identities = 187/262 (71%), Positives = 221/262 (84%), Gaps = 1/262 (0%)

gi|67543535|ref|ZP_00421467.1|  Integrase, catalytic region [Burkholderia vietnamiensis G4]
     Length=334
     Score =  382 bits (982),  Expect = 5e-105
     Identities = 185/261 (70%), Positives = 214/261 (81%), Gaps = 1/261 (0%)






 
Structural Features:
pfam00665, rve, Integrase core domain.
             CD-Length = 160 residues,  98.1% aligned
             Score =  103 bits (258), Expect = 2e-23

COG2801, Tra5, Transposase and inactivated derivatives [DNA replication, recombination, and repair].
             CD-Length = 232 residues,  97.8% aligned
             Score = 59.2 bits (141), Expect = 5e-10






   
Genomic Context:
The gene pair PA0986 and PA0987 appear in two positions in the PA14 genome:
here and at GeneIDs 5292 and 2939 (Trivial Names PA14_55070 and PA14_55060,
respectively).  Neither of these two locations are in the genomic context 
found in PAO1.






   
Comment:


















    ReferenceID:5817




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22959




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2907
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4707
                           PA0987_tr
                           translation of PA0987
                           280
                           96.78
                           97.85
                           1
                           1394.0
     

     
     
135372
                           gb|AAG04376.1|AE004531_13
                           (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           280
                           96.78
                           97.85
                           1
                           1394.0
     

     
     
135373
                           emb|CAD18368.1|
                           (AL646083) ISRSO14-TRANSPOSASE ORFB PROTEIN [Ralstonia solanacearum]
                           283
                           67.13
                           78.79
                           12
                           992.0
     

     
     
135374
                           emb|CAD16112.1|
                           (AL646070) ISRSO14-TRANSPOSASE ORFB PROTEIN [Ralstonia solanacearum]
                           283
                           67.13
                           78.79
                           12
                           992.0
     

     
     
135375
                           emb|CAD15194.1|
                           (AL646064) ISRSO14-TRANSPOSASE ORFB PROTEIN [Ralstonia solanacearum]
                           283
                           67.13
                           78.79
                           12
                           992.0
     

     






      

          
GC ORFID: 45909How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0987Glimmer Score: 

          
Start: 6081898Stop: 6081059

          
Length: 840


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0987 translation of PA0987Homolog Bit Score 540.0

          
Other Homologs:  t_RS13 (ORF: BLASTX 316.0), t_PA0987 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGGCGCGAACTGGCATCTCCGAGCGTCGTGCCTGTCAGTTGATCGGGCTGTCCCGCTCGGTGTTGCGC 
TACCAGCCGCGAGCCAGTGTGCAAAACGAGCTGCAAGCCCAACTGGTGGAACTGGCCCAAGAGCGCCGGCGC 
TTTGGCTATCGCCGCCTGCACATCCTGCTGCGGCGTGCTGGCGTGCAGGTCAACCACAAGCGGATCTATCGC 
CTGTACCGCGCTGCCGGCTTGATGGTGAAACGGCGGCGCCGCCGCCATGGCGTCGCGGTGGAGCGCGAACGT 
CTGAGTTTGCCGAGCGCACCAAACCAGGTCTGGTCGATGGACTTCGTCTTCGATGCACTGAGCACCGGGCGG 
CGGATCAAATGCCTGACGGTGGTCGATGACTTCACCAAGGAGTCGGTCGGCATCCTGGTGGAGCACGGTATC 
AGCGGCTTTCGCGTCACACGGGCGCTGGACGAGATGGCGCGGTTTCGCGGCTACCCGAAAGCGAGCCGCACC 
GACCAAGGGCCCGAGTTCACCGGCAAGGCACTCGATCAATGGGCCTATCAGCGCGACATCAAGCTGAAGCTG 
ATTCAGCCTGGTAAGCCCACGCAGAATGCCTTCATCAAGTCGTTCAACGGTAAGTTCCGGGACGAATGCCTC 
AGTGAGCACTGGTTCTATTCGCTGGCCGAAGCGAGAATCCGCATCGCGGCCTGGCGGCGGGATTACAACGAA 
CACCGACCGCACAGCGCGATTGGCAATCTCACCCCGGCAGAATTTGCTGCAAGTTGGCGAACTCGCCAGCAG 
CAGCTGAAGCAGGAAAAATTAATATCAACCCCAGGGCTTACTAACTAG