ViewGene
Locus Name:
GeneID:
Location:

GeneID:2906
TrivialName: PA14_55730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55730
PAO1 Ortholog Locus:PA4288
Sequence Length:804
Protein Length:267
Start: 4973983
Stop: 4974786
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07676.1|AE004845_2 (AE004845) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 266/267 (99%), Positives = 266/267 (99%)
Sequence:
ATGTCGACCACCACCCTGCTGCGCCTTCCCGATCTCCAGGGGCAGTCTTTCGACGTCTATTTCCGCTATGAC
GAGTTCGGCGCCGACACCCATTCGCCGCCGCACACCCACGCCTGGGGCCAGCTCAACTATGCAGCCCATGGC
GTGATGCAGCTGGAGATCGACGGCCAGCGCTTCCTCTCGCCTCCGCAATACGCGGTATGGATACCACCGGAG
CGGGTGCACAGCTGCTACAACAGCCAGGCCATCGTCTACCGCTCGCTGTACCTCTCCGCCGAACTGTCACGA
CGCCTGCCGGCGACACCCTGCACCCTGGCGATCAGCGCGATCCTCAAGGCAATCCTCTCGGACTTCGCCGAG
CGCGGGGTCAACCTGCCGACCTCGGCGCAGGACCTGCGCCTGGCCCGGGTCGTCATGGACCAGTTGGAATGC
GCCCAGCCCCACGACGACTACCTGCCCTACAGCCGTACCCCGGCGCTGCGCGAGGTGCTCGACGCACTGCAG
GCCGAGCCGGGCGACAACCGCTCGCTGGCGCAATGGGCGCAGCAGGTGCACAGCACCGAGCGAACCCTGGCC
CGACACTGCCAGCGCGAACTGGGCATGACCTTCGGCGAATGGCGCCAACGCCTGCGCTTCCTCGCGGCCATC
GAGGCGCTGGAAGCCGGCAGGGGGATCCAGCAGATCGCCTTCGACCTCGGCTACAGCAGCCCCTCGGCGTTC
ATCTCGATGTTCCGCCGGCTGGCCGGCACCACGCCGGAACAATACCGCCTGGCCAGCCGCGCCCAGGACATG
CCGATGCTGTAA
Translation:
MSTTTLLRLPDLQGQSFDVYFRYDEFGADTHSPPHTHAWGQLNYAAHGVMQLEIDGQRFLSPPQYAVWIPPE
RVHSCYNSQAIVYRSLYLSAELSRRLPATPCTLAISAILKAILSDFAERGVNLPTSAQDLRLARVVMDQLEC
AQPHDDYLPYSRTPALREVLDALQAEPGDNRSLAQWAQQVHSTERTLARHCQRELGMTFGEWRQRLRFLAAI
EALEAGRGIQQIAFDLGYSSPSAFISMFRRLAGTTPEQYRLASRAQDMPML*
AnnotationID:2914GeneID:2906
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 07:07:04
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA4288
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70421.1|AE016683_12 (AE016792) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 262

 Score =  317 bits (811), Expect = 6e-86
 Identities = 160/254 (62%), Positives = 185/254 (72%)

>gb|AAL46026.1| (AE008955) transcriptional regulator. AraC family [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 264

 Score =  229 bits (585), Expect = 1e-59
 Identities = 109/236 (46%), Positives = 160/236 (67%)






 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 76.4 bits (188), Expect = 3e-15
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5815




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22957




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36651




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2906_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2906
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4706
                           PA4288_tr
                           translation of PA4288
                           267
                           99.62
                           99.62
                           0
                           1390.0
     

     
     
135358
                           gb|AAG07676.1|AE004845_2
                           (AE004845) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           267
                           99.62
                           99.62
                           0
                           1390.0
     

     
     
135359
                           gb|AAN70421.1|AE016683_12
                           (AE016792) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           267
                           59.92
                           69.28
                           5
                           802.0
     

     
     
135363
                           emb|CAC93001.1|
                           (AJ414153) putative AraC-family regulatory protein [Yersinia pestis CO92]
                           276
                           41.66
                           59.78
                           24
                           575.0
     

     
     
135362
                           gb|AAM85165.1|AE013762_7
                           (AE013762) putative transcriptional regulator [Yersinia pestis KIM]
                           276
                           41.66
                           59.78
                           24
                           575.0
     

     






      

          
GC ORFID: 45908How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4288Glimmer Score: 

          
Start: 4237659Stop: 4238462

          
Length: 804


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4288 translation of PA4288Homolog Bit Score 540.0

          
Other Homologs:  t_PA4288 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGACCACCACCCTGCTGCGCCTTCCCGATCTCCAGGGGCAGTCTTTCGACGTCTATTTCCGCTATGAC 
GAGTTCGGCGCCGACACCCATTCGCCGCCGCACACCCACGCCTGGGGCCAGCTCAACTATGCAGCCCATGGC 
GTGATGCAGCTGGAGATCGACGGCCAGCGCTTCCTCTCGCCTCCGCAATACGCGGTATGGATACCACCGGAG 
CGGGTGCACAGCTGCTACAACAGCCAGGCCATCGTCTACCGCTCGCTGTACCTCTCCGCCGAACTGTCACGA 
CGCCTGCCGGCGACACCCTGCACCCTGGCGATCAGCGCGATCCTCAAGGCAATCCTCTCGGACTTCGCCGAG 
CGCGGGGTCAACCTGCCGACCTCGGCGCAGGACCTGCGCCTGGCCCGGGTCGTCATGGACCAGTTGGAATGC 
GCCCAGCCCCACGACGACTACCTGCCCTACAGCCGTACCCCGGCGCTGCGCGAGGTGCTCGACGCACTGCAG 
GCCGAGCCGGGCGACAACCGCTCGCTGGCGCAATGGGCGCAGCAGGTGCACAGCACCGAGCGAACCCTGGCC 
CGACACTGCCAGCGCGAACTGGGCATGACCTTCGGCGAATGGCGCCAACGCCTGCGCTTCCTCGCGGCCATC 
GAGGCGCTGGAAGCCGGCAGGGGGATCCAGCAGATCGCCTTCGACCTCGGCTACAGCAGCCCCTCGGCGTTC 
ATCTCGATGTTCCGCCGGCTGGCCGGCACCACGCCGGAACAATACCGCCTGGCCAGCCGCGCCCAGGACATG 
CCGATGCTGTAA