ViewGene
Locus Name:
GeneID:
Location:

GeneID:2904
TrivialName: PA14_17050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17050
PAO1 Ortholog Locus:PA3657
Sequence Length:786
Protein Length:261
Start: 1462847
Stop: 1462062
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07045.1|AE004785_9 (AE004785) methionine aminopeptidase [Pseudomonas aeruginosa PAO1]
Identities = 261/261 (100%), Positives = 261/261 (100%)
Sequence:
ATGACCGTCACCATCAAGACGCCGGACGATATCGAGAAGATGCGCATCGCCGGCCGCCTGGCCGCCGAAGTG
CTGGAAATGATCGGCGAACACATCAAGCCCGGCGTGACCACCGAGGAGCTGGACCGCATCTGCCACGACTAT
ATCGTCAACGAGCAGAAGGCGATTCCCGCCCCGCTGAACTACAAGGGCTTTCCCAAGTCGATCTGCACCTCG
ATCAACCATGTGGTCTGCCATGGCATCCCCAACGAGAAGCCGCTGAAGGAAGGCGACATCCTCAACGTCGAC
ATCACCGTCATCAAGGACGGCTACCACGGCGACACCAGCAAGATGTTCCTGGTCGGCAAGACCCCGGAATGG
GCCGACCGCCTCTGCCAGATCACCCAGGAATGCATGTACAAGGGCATTTCCGTGGTGCGTCCGGGCGCGCAC
CTGGGCGATATCGGCGAAATCATCCAGAAGCACGCGGAAAAGAACGGCTTCTCGGTGGTCCGCGAATACTGC
GGCCATGGCATCGGCAAGGTGTTCCACGAGGAGCCGCAGGTCCTCCACTACGGTCGTGCGGGTACCGGCATC
GAGCTGAAGGAAGGCATGATCTTCACCATCGAGCCGATGATCAACCAGGGCCGCCCGGAGACCCGCCTGCTC
GGCGACGGCTGGACCGCGATCACCAAGGACCGCAAGCTGTCCGCGCAATGGGAGCACACCGTGCTGGTCACC
GCCGATGGCTACGAGATCCTCACCCTGCGCAACGACGAAACCTTCCCGCGCACCTCGGCCGCCTGA
Translation:
MTVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTS
INHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAH
LGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLL
GDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTSAA*
AnnotationID:2912GeneID:2904
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 06:06:42
Gene Name:map
Confidence Code:2
GeneProduct:methionine aminopeptidase, type I
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0024
Secondary Functional Category(ies):
EC Number:3.4.11.18
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67211.1|AE016348_3 (AE016779) methionine aminopeptidase, type I [Pseudomonas putida
           KT2440]
          Length = 260

 Score =  466 bits (1198), Expect = e-131
 Identities = 215/260 (82%), Positives = 241/260 (92%)

>gb|AAN78697.1|AE016755_197 (AE016755) Methionine aminopeptidase [Escherichia coli CFT073]
          Length = 264

 Score =  354 bits (908), Expect = 3e-97
 Identities = 169/257 (65%), Positives = 206/257 (80%), Gaps = 1/257 (0%)






 
Structural Features:
COG0024, Map, Methionine aminopeptidase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 255 residues, 100.0% aligned
Score =  359 bits (924), Expect = 3e-100
Identities = 143/256 (55%), Positives = 180/256 (70%), Gaps = 4/256 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5811




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22953




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31886




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2904_cdd.html


    		




 
URL:

















    ReferenceID:34233




  
Author/Investigator(s):
        Taroncher-Oldenburg G, Anderson DM.





  
Title:
        Identification and characterization of three differentially expressed genes, encoding S-adenosylhomocysteine hydrolase, methionine aminopeptidase, and a histone-like protein, in the toxic dinoflagellate Alexandrium fundyense.




  
PubMed:
        10788388


MedLine:
        




    
Source:
Appl Environ Microbiol. 2000 May;66(5):2105-12.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10788388

















    ReferenceID:34234




  
Author/Investigator(s):
        Chang SY, McGary EC, Chang S.





  
Title:
        Methionine aminopeptidase gene of Escherichia coli is essential for cell growth.




  
PubMed:
        2544569


MedLine:
        




    
Source:
J Bacteriol. 1989 Jul;171(7):4071-2.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2544569

















    ReferenceID:34235




  
Author/Investigator(s):
        Tsunasawa S, Izu Y, Miyagi M, Kato I.





  
Title:
        Methionine aminopeptidase from the hyperthermophilic Archaeon Pyrococcus furiosus: molecular cloning and overexpression in Escherichia coli of the gene, and characteristics of the enzyme.




  
PubMed:
        9399590


MedLine:
        




    
Source:
J Biochem (Tokyo). 1997 Oct;122(4):843-50.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9399590









           
Homologs By Global Alignment 

           

       



     
Gene ID:2904
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4703
                           PA3657_tr
                           translation of PA3657
                           261
                           99.99
                           99.99
                           0
                           1392.0
     

     
     
135222
                           gb|AAG07045.1|AE004785_9
                           (AE004785) methionine aminopeptidase [Pseudomonas aeruginosa PAO1]
                           261
                           99.99
                           99.99
                           0
                           1392.0
     

     
     
135223
                           gb|AAN67211.1|AE016348_3
                           (AE016779) methionine aminopeptidase, type I [Pseudomonas putida KT2440]
                           261
                           82.37
                           92.33
                           1
                           1198.0
     

     
     
135224
                           gb|AAO55053.1|
                           (AE016861) methionine aminopeptidase, type I [Pseudomonas syringae pv. tomato str. DC3000]
                           261
                           79.69
                           90.80
                           1
                           1168.0
     

     
     
135225
                           gb|AAO90891.1|
                           (AE016964) methionine aminopeptidase, type I [Coxiella burnetii RSA 493]
                           262
                           69.46
                           80.15
                           5
                           984.0
     

     






      

          
GC ORFID: 45906How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3657Glimmer Score: 

          
Start: 3491090Stop: 3491875

          
Length: 786


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3657 translation of PA3657Homolog Bit Score 540.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4797 (ORF: BLASTX 452.0), psyr_15may02_Scaffold1_revised_gene1116 (ORF: BLASTX 306.0), t_PA2748 (ORF: BLASTX 300.0), t_PA3657 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGTCACCATCAAGACGCCGGACGATATCGAGAAGATGCGCATCGCCGGCCGCCTGGCCGCCGAAGTG 
CTGGAAATGATCGGCGAACACATCAAGCCCGGCGTGACCACCGAGGAGCTGGACCGCATCTGCCACGACTAT 
ATCGTCAACGAGCAGAAGGCGATTCCCGCCCCGCTGAACTACAAGGGCTTTCCCAAGTCGATCTGCACCTCG 
ATCAACCATGTGGTCTGCCATGGCATCCCCAACGAGAAGCCGCTGAAGGAAGGCGACATCCTCAACGTCGAC 
ATCACCGTCATCAAGGACGGCTACCACGGCGACACCAGCAAGATGTTCCTGGTCGGCAAGACCCCGGAATGG 
GCCGACCGCCTCTGCCAGATCACCCAGGAATGCATGTACAAGGGCATTTCCGTGGTGCGTCCGGGCGCGCAC 
CTGGGCGATATCGGCGAAATCATCCAGAAGCACGCGGAAAAGAACGGCTTCTCGGTGGTCCGCGAATACTGC 
GGCCATGGCATCGGCAAGGTGTTCCACGAGGAGCCGCAGGTCCTCCACTACGGTCGTGCGGGTACCGGCATC 
GAGCTGAAGGAAGGCATGATCTTCACCATCGAGCCGATGATCAACCAGGGCCGCCCGGAGACCCGCCTGCTC 
GGCGACGGCTGGACCGCGATCACCAAGGACCGCAAGCTGTCCGCGCAATGGGAGCACACCGTGCTGGTCACC 
GCCGATGGCTACGAGATCCTCACCCTGCGCAACGACGAAACCTTCCCGCGCACCTCGGCCGCCTGA