ViewGene
Locus Name:
GeneID:
Location:

GeneID:2903
TrivialName: PA14_29830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29830
PAO1 Ortholog Locus:PA2650
Sequence Length:810
Protein Length:269
Start: 2584065
Stop: 2583256
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06038.1|AE004694_1 (AE004694) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 267/269 (99%), Positives = 269/269 (100%)
Sequence:
ATGCCCACCTTCCACGATATCGACGTCCTGCGACACAACAGCGCCAGTTGGGACGCCCAGGCCGCCCGTGAC
TGCGAATGGTCGCGACCGGTCAGCGCCGAAGAGGTCGCCGCCGCACGCCGCGGCGACTGGGCGGTGAAGCTA
ACCCCGGGCGCGTTACCCGCTCACTGGCTGGGCGACGTACGCGGCCGCGAGATCCTCTGCCTGGCCTCGGCC
GGCGGCCAGCAGGCGCCGATCCTTGCCGCCGCCGGCGCACGGGTCACGCTGTTCGACGCCTCGGCGGGACAG
CTGGACAAGGACCGCCAGGTCGCCGCCCGCGACCGCCTCGAACTGGCCTGCGTGCAGGGCGACATGCGCGAC
CTCTCGACCTTCGCCGATGCCTCCTTCGACCTGGTCTTCAATCCCATCTCCAATCTCTACGTCGACGATGTC
CTGCCGGTCTGGCGCGAATGCGCGCGGGTGCTGCGGCCGGGCGGCAAGCTGCTGGCGAGCTTCTACAACCCG
GCGCTGTTCATCGAGGACCGCTCGCCGGAACTGGCAGAGCAGGGCCTGATCCGGCCGCGACATCGCCTGCCC
TACTCCGACCTGGAAAGCCTCTCCGCCGAAGCCCTCGCGGCGAAGCGCGAGAAAGGCGAAGCCCTGGTGTTC
GGCCATAGCCTGACCCAGCAAATCGCCGGCCAGCTCGCCGCCGGCCTGCTGCTGCAGGATTTCTACGAAGAC
TGGCAACCGCACCCGCGCTTCGTCATCGACCGCTTCATGCCGACCTTCCTCGCCACCTGCGCGCTCAAGCCG
AGGTCCGCCGCCGGTTGA
Translation:
MPTFHDIDVLRHNSASWDAQAARDCEWSRPVSAEEVAAARRGDWAVKLTPGALPAHWLGDVRGREILCLASA
GGQQAPILAAAGARVTLFDASAGQLDKDRQVAARDRLELACVQGDMRDLSTFADASFDLVFNPISNLYVDDV
LPVWRECARVLRPGGKLLASFYNPALFIEDRSPELAEQGLIRPRHRLPYSDLESLSAEALAAKREKGEALVF
GHSLTQQIAGQLAAGLLLQDFYEDWQPHPRFVIDRFMPTFLATCALKPRSAAG*
AnnotationID:2911GeneID:2903
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 14:02:37
Gene Name:
Confidence Code:3
GeneProduct:putative methyltransferase
Cell Localization:()
Synonyms:PA2650
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD72990.1| (BX294138) conserved hypothetical protein-putative SAM-dependent
           methyltransferases [Pirellula sp.]
          Length = 266

 Score =  241 bits (616), Expect = 2e-63
 Identities = 125/260 (48%), Positives = 170/260 (65%), Gaps = 9/260 (3%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5809




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22951




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33196




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2903_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2903
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4702
                           PA2650_tr
                           translation of PA2650
                           269
                           99.25
                           99.99
                           0
                           1392.0
     

     
     
135215
                           gb|AAG06038.1|AE004694_1
                           (AE004694) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           269
                           99.25
                           99.99
                           0
                           1392.0
     

     
     
135216
                           gb|AAQ59289.1|
                           (AE016915) probable 3-demethylubiquinone-9 3-methyltransferase [Chromobacterium violaceum ATCC 12472]
                           270
                           65.92
                           74.44
                           5
                           911.0
     

     
     
135217
                           emb|CAD72990.1|
                           (BX294138) conserved hypothetical protein-putative SAM-dependent methyltransferases [Pirellula sp.] [Pirellula sp. 1]
                           275
                           45.81
                           62.54
                           15
                           619.0
     

     
     
135218
                           emb|CAB11927.1|
                           (Z99104) ybaJ [Bacillus subtilis subsp. subtilis str. 168]
                           271
                           40.59
                           61.99
                           18
                           557.0
     

     






      

          
GC ORFID: 45905How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2650Glimmer Score: 

          
Start: 2369861Stop: 2370670

          
Length: 810


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2650 translation of PA2650Homolog Bit Score 540.0

          
Other Homologs:  t_PA2650 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCACCTTCCACGATATCGACGTCCTGCGACACAACAGCGCCAGTTGGGACGCCCAGGCCGCCCGTGAC 
TGCGAATGGTCGCGACCGGTCAGCGCCGAAGAGGTCGCCGCCGCACGCCGCGGCGACTGGGCGGTGAAGCTA 
ACCCCGGGCGCGTTACCCGCTCACTGGCTGGGCGACGTACGCGGCCGCGAGATCCTCTGCCTGGCCTCGGCC 
GGCGGCCAGCAGGCGCCGATCCTTGCCGCCGCCGGCGCACGGGTCACGCTGTTCGACGCCTCGGCGGGACAG 
CTGGACAAGGACCGCCAGGTCGCCGCCCGCGACCGCCTCGAACTGGCCTGCGTGCAGGGCGACATGCGCGAC 
CTCTCGACCTTCGCCGATGCCTCCTTCGACCTGGTCTTCAATCCCATCTCCAATCTCTACGTCGACGATGTC 
CTGCCGGTCTGGCGCGAATGCGCGCGGGTGCTGCGGCCGGGCGGCAAGCTGCTGGCGAGCTTCTACAACCCG 
GCGCTGTTCATCGAGGACCGCTCGCCGGAACTGGCAGAGCAGGGCCTGATCCGGCCGCGACATCGCCTGCCC 
TACTCCGACCTGGAAAGCCTCTCCGCCGAAGCCCTCGCGGCGAAGCGCGAGAAAGGCGAAGCCCTGGTGTTC 
GGCCATAGCCTGACCCAGCAAATCGCCGGCCAGCTCGCCGCCGGCCTGCTGCTGCAGGATTTCTACGAAGAC 
TGGCAACCGCACCCGCGCTTCGTCATCGACCGCTTCATGCCGACCTTCCTCGCCACCTGCGCGCTCAAGCCG 
AGGTCCGCCGCCGGTTGA