ViewGene

Locus Name:
GeneID:
Location:

GeneID:2902
TrivialName: PA14_41680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41680
PAO1 Ortholog Locus:PA1769
Sequence Length:825
Protein Length:274
Start: 3720802
Stop: 3721626
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05158.1|AE004602_9 (AE004602) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 274/274 (100%), Positives = 274/274 (100%)
Sequence:
GTGCAAATGAAACGAACCGCATTCTTCATCTCGGACGGCACCGGTATCACCGCCGAAACCCTGGGCCAAAGC
CTTCTGGCACAGTTCGAGAACATCAGCTTCGTCAAACTGACGAGACCGTACATCGATACCGAAGAAAAAGCG
CGCGCCATGGTACAGCAAATCAATAATGCTGCCGAGTCGGACGGGGCCCGCCCGATCATCTTCGATACCATC
GTGAACCGCGACATCCGGGCGGTCCTGGCGCAATCCAACGGTTTCATGATCGATATCTTCGCCACCTTTCTT
TCGCCTCTGGAACAGGAGCTTTCGGCCGACTCGTCCTATTCGGTCGGCAAGTCCCACTCCATCGGCCACAAC
TCCAACTACATGGATCGCATCGAGGCGGTGAACTTCGCCCTCGACAACGACGACGGCGCCCGCACCCACTAC
TACGACAAGGCCGACCTGATCCTGGTCGGCGTCTCGCGCTGCGGCAAGACGCCCACCTGCCTGTACATGGCC
CTGCAGTATGGCATCCGCGCCGCCAACTACCCGTTGACGGAAGAGGACATGGAGCGCCTGCAACTGCCGAAC
GCCCTCAAGCAGTACAAGCACAAGCTGTTCGGCCTGACCATCGACCCCGACCGCCTCACCGCGATCCGCAAC
GAACGCAAGCCCAACAGTCGCTACGCCAGCTTCGCCCAGTGCGAATTCGAGGTACGCGAGGTCGAAAGCCTG
TTCCGCCGCGAAAACATCGCCTACATCAACTCCACGCATTTCTCGGTGGAGGAGATTTCCGCAAAGATCCTC
GTCGAAAAAGGCGTGGAACGGCGCTTCAAATAA
Translation:
MQMKRTAFFISDGTGITAETLGQSLLAQFENISFVKLTRPYIDTEEKARAMVQQINNAAESDGARPIIFDTI
VNRDIRAVLAQSNGFMIDIFATFLSPLEQELSADSSYSVGKSHSIGHNSNYMDRIEAVNFALDNDDGARTHY
YDKADLILVGVSRCGKTPTCLYMALQYGIRAANYPLTEEDMERLQLPNALKQYKHKLFGLTIDPDRLTAIRN
ERKPNSRYASFAQCEFEVREVESLFRRENIAYINSTHFSVEEISAKILVEKGVERRFK*
AnnotationID:2910GeneID:2902
AnnotatorUID: diggins
Modification Date/Time: 2005-01-14 21:09:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:ydiA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD15122.1| (AL646064) PUTATIVE ATP-BINDING PROTEIN [Ralstonia solanacearum]
          Length = 279

 Score =  274 bits (700), Expect = 5e-73
 Identities = 133/267 (49%), Positives = 189/267 (70%), Gaps = 1/267 (0%)

>gb|AAN80559.1|AE016761_134 (AE016761) Hypothetical protein ydiA [Escherichia coli CFT073]
          Length = 277

 Score =  265 bits (676), Expect = 3e-70
 Identities = 134/270 (49%), Positives = 187/270 (69%), Gaps = 3/270 (1%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:14699
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22949
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37135
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2902_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2902

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4701 PA1769_tr translation of PA1769 274 99.99 99.99 0 1392.0
135177 gb|AAG05158.1|AE004602_9 (AE004602) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 274 99.63 99.99 0 1389.0
135178 gb|AAO55805.1| (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 274 87.22 94.52 2 1239.0
135179 gb|AAN67695.1|AE016400_3 (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440] 274 86.86 92.33 2 1211.0
135183 gb|AAQ61372.1| (AE016923) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 274 51.09 71.16 1 718.0
GC ORFID: 45904How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1769Glimmer Score:
Start: 1233107Stop: 1232283
Length: 825
Start Codon: GTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1769 translation of PA1769Homolog Bit Score 540.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene371 (ORF: BLASTX 485.0), t_PA1769 (ORF: GLIMMER)
GC ORF Sequence
GTGCAAATGAAACGAACCGCATTCTTCATCTCGGACGGCACCGGTATCACCGCCGAAACCCTGGGCCAAAGC
CTTCTGGCACAGTTCGAGAACATCAGCTTCGTCAAACTGACGAGACCGTACATCGATACCGAAGAAAAAGCG
CGCGCCATGGTACAGCAAATCAATAATGCTGCCGAGTCGGACGGGGCCCGCCCGATCATCTTCGATACCATC
GTGAACCGCGACATCCGGGCGGTCCTGGCGCAATCCAACGGTTTCATGATCGATATCTTCGCCACCTTTCTT
TCGCCTCTGGAACAGGAGCTTTCGGCCGACTCGTCCTATTCGGTCGGCAAGTCCCACTCCATCGGCCACAAC
TCCAACTACATGGATCGCATCGAGGCGGTGAACTTCGCCCTCGACAACGACGACGGCGCCCGCACCCACTAC
TACGACAAGGCCGACCTGATCCTGGTCGGCGTCTCGCGCTGCGGCAAGACGCCCACCTGCCTGTACATGGCC
CTGCAGTATGGCATCCGCGCCGCCAACTACCCGTTGACGGAAGAGGACATGGAGCGCCTGCAACTGCCGAAC
GCCCTCAAGCAGTACAAGCACAAGCTGTTCGGCCTGACCATCGACCCCGACCGCCTCACCGCGATCCGCAAC
GAACGCAAGCCCAACAGTCGCTACGCCAGCTTCGCCCAGTGCGAATTCGAGGTACGCGAGGTCGAAAGCCTG
TTCCGCCGCGAAAACATCGCCTACATCAACTCCACGCATTTCTCGGTGGAGGAGATTTCCGCAAAGATCCTC
GTCGAAAAAGGCGTGGAACGGCGCTTCAAATAA