ViewGene
Locus Name:
GeneID:
Location:

GeneID:2901
TrivialName: PA14_48390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48390
PAO1 Ortholog Locus:PA1229
Sequence Length:807
Protein Length:268
Start: 4303213
Stop: 4304019
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04618.1|AE004552_8 (AE004552) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 268/268 (100%), Positives = 268/268 (100%)
Sequence:
GTGAGCCGTGAACCGCAGACCTACCTCGCCCAACGCTTCGATCCCGACGCGCTCGGCCAGCCGGCCCTGGCC
CTGCAGCTGGAGGCCCGGCACAACGACACCGAAGTGCCGGTGCACCGGCATCGCAAGGGCCAGCTGGTGGTG
GCCTGCCGCGGCGGCATCACCTGCACGGTGCCCGATGGCCTGTGGATGGTGCCGGCCGGGTTCGGTGTGTGG
ATTCCCGGCGGCATCGCCCATAGCAACCGGGTCACCGCCAACGGCAAGGTCTGCTTCCTCTTCGTCGAGCCG
GGGGCGGCACGCCTGCCGAGCGACTGCTGCACCCTGGCCCTGTCGCCGCTGGTCCTCGAACTGATCCTGCAC
CTGAGCGCGCAACCGCAGGACTATCCGCACGACGGCCCGCTCGCACGTCTCGCCGGGGTGCTGCTGGAACTC
CTGGAACAGGCGCCGACCGAACAGCTCTACCTGCCGCTGCCGGACAACCGCGGCCTGCGCCGCATCGCCGAC
GAACTGACCCGCGCCCCCGGCGACCGCGCCAGCATGGCCGAATGGGCCAGGCGAGTGGCGATGAGCGAGCGG
TCCCTGGCGCGGATGGTGCGCCGGGAGACCGGCATGACCTTCGGCCAGTGGCGCCAGCAATTGCAGATCATC
ATCGCCCTGCAGCAACTGTCCGCCGGCGTTTCGGTGCAACGCACCGCCGAGATCCTCGGCTACGAGTCGGTC
AGCTCGTTCATCGGCATGTTCCGCAAGGCGCTCGGCAGCCCCCCGGCCCGCTACGTGCGCGACAGCATGCGG
CGGCCAGCCGACTGA
Translation:
MSREPQTYLAQRFDPDALGQPALALQLEARHNDTEVPVHRHRKGQLVVACRGGITCTVPDGLWMVPAGFGVW
IPGGIAHSNRVTANGKVCFLFVEPGAARLPSDCCTLALSPLVLELILHLSAQPQDYPHDGPLARLAGVLLEL
LEQAPTEQLYLPLPDNRGLRRIADELTRAPGDRASMAEWARRVAMSERSLARMVRRETGMTFGQWRQQLQII
IALQQLSAGVSVQRTAEILGYESVSSFIGMFRKALGSPPARYVRDSMRRPAD*
AnnotationID:2909GeneID:2901
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 07:07:20
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator araC family
Cell Localization:()
Synonyms:yeaM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM37088.1| (AE011861) transcriptional regulator araC family [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 264

 Score =  300 bits (768), Expect = 6e-81
 Identities = 139/247 (56%), Positives = 188/247 (76%)

>dbj|BAB50173.1| (AP003001) transcriptional regulator (AraC/XylS family)
           [Mesorhizobium loti]
          Length = 268

 Score =  266 bits (680), Expect = 9e-71
 Identities = 132/262 (50%), Positives = 179/262 (68%), Gaps = 3/262 (1%)

>gb|AAN80654.1|AE016761_229 (AE016761) Hypothetical transcriptional regulator yeaM [Escherichia
           coli CFT073]
          Length = 273

 Score =  244 bits (623), Expect = 4e-64
 Identities = 117/247 (47%), Positives = 168/247 (68%)






 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  96.4% aligned
Score = 71.0 bits (174), Expect = 1e-13
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14697




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22947




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37550




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2901_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2901
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4700
                           PA1229_tr
                           translation of PA1229
                           268
                           99.99
                           99.99
                           0
                           1390.0
     

     
     
135160
                           gb|AAG04618.1|AE004552_8
                           (AE004552) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           268
                           99.62
                           99.99
                           0
                           1387.0
     

     
     
135161
                           gb|AAM37088.1|
                           (AE011861) transcriptional regulator araC family [Xanthomonas axonopodis pv. citri str. 306]
                           270
                           52.96
                           71.85
                           8
                           759.0
     

     
     
135162
                           gb|AAK90920.1|
                           (AE007922) AGR_pAT_810p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           274
                           50.72
                           68.61
                           12
                           697.0
     

     
     
135165
                           dbj|BAC49267.1|
                           (AP005949) transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110]
                           275
                           49.45
                           65.45
                           19
                           673.0
     

     






      

          
GC ORFID: 45903How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1229Glimmer Score: 

          
Start: 650695Stop: 649889

          
Length: 807


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1229 translation of PA1229Homolog Bit Score 540.0

          
Other Homologs:  t_PA1229 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCCGTGAACCGCAGACCTACCTCGCCCAACGCTTCGATCCCGACGCGCTCGGCCAGCCGGCCCTGGCC 
CTGCAGCTGGAGGCCCGGCACAACGACACCGAAGTGCCGGTGCACCGGCATCGCAAGGGCCAGCTGGTGGTG 
GCCTGCCGCGGCGGCATCACCTGCACGGTGCCCGATGGCCTGTGGATGGTGCCGGCCGGGTTCGGTGTGTGG 
ATTCCCGGCGGCATCGCCCATAGCAACCGGGTCACCGCCAACGGCAAGGTCTGCTTCCTCTTCGTCGAGCCG 
GGGGCGGCACGCCTGCCGAGCGACTGCTGCACCCTGGCCCTGTCGCCGCTGGTCCTCGAACTGATCCTGCAC 
CTGAGCGCGCAACCGCAGGACTATCCGCACGACGGCCCGCTCGCACGTCTCGCCGGGGTGCTGCTGGAACTC 
CTGGAACAGGCGCCGACCGAACAGCTCTACCTGCCGCTGCCGGACAACCGCGGCCTGCGCCGCATCGCCGAC 
GAACTGACCCGCGCCCCCGGCGACCGCGCCAGCATGGCCGAATGGGCCAGGCGAGTGGCGATGAGCGAGCGG 
TCCCTGGCGCGGATGGTGCGCCGGGAGACCGGCATGACCTTCGGCCAGTGGCGCCAGCAATTGCAGATCATC 
ATCGCCCTGCAGCAACTGTCCGCCGGCGTTTCGGTGCAACGCACCGCCGAGATCCTCGGCTACGAGTCGGTC 
AGCTCGTTCATCGGCATGTTCCGCAAGGCGCTCGGCAGCCCCCCGGCCCGCTACGTGCGCGACAGCATGCGG 
CGGCCAGCCGACTGA