ViewGene
Locus Name:
GeneID:
Location:

GeneID:2900
TrivialName: PA14_67780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67780
PAO1 Ortholog Locus:PA5132
Sequence Length:819
Protein Length:272
Start: 6052158
Stop: 6052976
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08517.1|AE004926_7 (AE004926) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 267/272 (98%), Positives = 269/272 (98%)
Sequence:
ATGTGGTTCCTCCTCGCCACCTCGCTCCTCGCCCTGTCCTTCCAGCGCCTGCTGGCTCTCGCCTTGCTGCTC
GCGACCTGCTGCCTCGCCTTCTACGACGGAGTTCTCGCTCCGCCTGCGGTCGCCGCCCTGGCTGTACTGGGC
GTCCTCGCCCTGTTGCGCCGGCGCCTGGCGGCACGCCGCGCCTGGGCCCTGGGCCTGGAGCTGCTGCTGGTC
GCCGGCGCGGTGGGCCTGTTCCTGCACCTGCTACCCGGCTTCGCCAACCCCAGGGTCCTGGACAAGGCGGTG
GTCGGCCCGCAGAGCCTGCCGTTCACCATGTACTTCAACTTCGACAAGGCACTGGTGCCGTTCCTGCTACTG
GCCTGCCTGCCGAGCCTGTTCCGCGACGAAGCCCGCGCTCCCGGCCGCCCCTGGCACTGGCTGCTGCTCGTG
GCGGCGGTGCCGGCGCTGCTTCTGCTGGCTGTCGGCGTCGGCCTGCTGCGGCCGGAACTCCACGCGCCGGCC
TGGCTCTGGCAGTTCGTCCTGGCCAACCTGTTCTTCGTTTCCCTTGCCGAGGAAGCGCTGTTCCGCGGCTAC
CTGCAGCAACGCCTGGGCCAATGGCTGGGCCCCTGGCCCGCCCTGGCGCTGGCCTCGGCGCTGTTCGGCCTG
GCGCACTTCGCCGGCGGCCCGCTGCTGATGCTGTTCGCCGGCCTCGCCGGGCTGATCTACGGGTTGGCCTGG
CTGTGGAGCGGCCGCCTGTGGGTGGCGACGCTGTTCCACTTCGGGCTGAACCTGACGCATCTGCTGCTGTTC
ACCTACCCGCTCTACAGACCCGCCTGA
Translation:
MWFLLATSLLALSFQRLLALALLLATCCLAFYDGVLAPPAVAALAVLGVLALLRRRLAARRAWALGLELLLV
AGAVGLFLHLLPGFANPRVLDKAVVGPQSLPFTMYFNFDKALVPFLLLACLPSLFRDEARAPGRPWHWLLLV
AAVPALLLLAVGVGLLRPELHAPAWLWQFVLANLFFVSLAEEALFRGYLQQRLGQWLGPWPALALASALFGL
AHFAGGPLLMLFAGLAGLIYGLAWLWSGRLWVATLFHFGLNLTHLLLFTYPLYRPA*
AnnotationID:2908GeneID:2900
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:21
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA5132
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative protease
Functional Category Confidence Code:5
COGs:pfam02517
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC89982.1| (AJ414146) putative membrane protein [Yersinia pestis CO92]
          Length = 272

 Score =  340 bits (872), Expect = 5e-93
 Identities = 169/271 (62%), Positives = 202/271 (74%)

>dbj|BAB34508.1| (AP002554) hypothetical membrane protein [Escherichia coli O157:H7]
          Length = 272

 Score =  277 bits (709), Expect = 4e-74
 Identities = 140/271 (51%), Positives = 185/271 (68%), Gaps = 2/271 (0%)








 
Structural Features:
pfam02517, Abi, CAAX amino terminal protease family.
CD-Length = 94 residues,  97.9% aligned
Score = 47.9 bits (114), Expect = 1e-06
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 1/92 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5803




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22945




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34934




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2900_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2900
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4699
                           PA5132_tr
                           translation of PA5132
                           272
                           98.16
                           98.89
                           0
                           1395.0
     

     
     
135152
                           gb|AAG08517.1|AE004926_7
                           (AE004926) hypothetical protein PA5132 [Pseudomonas aeruginosa PAO1]
                           272
                           98.16
                           98.89
                           0
                           1395.0
     

     
     
135153
                           gb|AAM86593.1|AE013905_9
                           (AE013905) hypothetical [Yersinia pestis KIM]
                           272
                           62.13
                           74.26
                           0
                           870.0
     

     
     
135154
                           emb|CAC89982.1|
                           (AJ414146) putative membrane protein [Yersinia pestis CO92]
                           272
                           62.13
                           74.26
                           0
                           870.0
     

     
     
135155
                           emb|CAE13765.1|
                           (BX571864) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           275
                           55.63
                           68.00
                           3
                           784.0
     

     






      

          
GC ORFID: 45902How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5132Glimmer Score: 

          
Start: 5315843Stop: 5316661

          
Length: 819


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5132 translation of PA5132Homolog Bit Score 541.0

          
Other Homologs:  t_PA5132 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGGTTCCTCCTCGCCACCTCGCTCCTCGCCCTGTCCTTCCAGCGCCTGCTGGCTCTCGCCTTGCTGCTC 
GCGACCTGCTGCCTCGCCTTCTACGACGGAGTTCTCGCTCCGCCTGCGGTCGCCGCCCTGGCTGTACTGGGC 
GTCCTCGCCCTGTTGCGCCGGCGCCTGGCGGCACGCCGCGCCTGGGCCCTGGGCCTGGAGCTGCTGCTGGTC 
GCCGGCGCGGTGGGCCTGTTCCTGCACCTGCTACCCGGCTTCGCCAACCCCAGGGTCCTGGACAAGGCGGTG 
GTCGGCCCGCAGAGCCTGCCGTTCACCATGTACTTCAACTTCGACAAGGCACTGGTGCCGTTCCTGCTACTG 
GCCTGCCTGCCGAGCCTGTTCCGCGACGAAGCCCGCGCTCCCGGCCGCCCCTGGCACTGGCTGCTGCTCGTG 
GCGGCGGTGCCGGCGCTGCTTCTGCTGGCTGTCGGCGTCGGCCTGCTGCGGCCGGAACTCCACGCGCCGGCC 
TGGCTCTGGCAGTTCGTCCTGGCCAACCTGTTCTTCGTTTCCCTTGCCGAGGAAGCGCTGTTCCGCGGCTAC 
CTGCAGCAACGCCTGGGCCAATGGCTGGGCCCCTGGCCCGCCCTGGCGCTGGCCTCGGCGCTGTTCGGCCTG 
GCGCACTTCGCCGGCGGCCCGCTGCTGATGCTGTTCGCCGGCCTCGCCGGGCTGATCTACGGGTTGGCCTGG 
CTGTGGAGCGGCCGCCTGTGGGTGGCGACGCTGTTCCACTTCGGGCTGAACCTGACGCATCTGCTGCTGTTC 
ACCTACCCGCTCTACAGACCCGCCTGA