ViewGene
Locus Name:
GeneID:
Location:

GeneID:290
TrivialName: PA14_47360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47360
PAO1 Ortholog Locus:PA1304
Sequence Length:2052
Protein Length:683
Start: 4217820
Stop: 4219871
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04693.1|AE004560_1 (AE004560) probable oligopeptidase [Pseudomonas aeruginosa PAO1]
Identities = 682/683 (99%), Positives = 682/683 (99%)
Sequence:
ATGCCCCATCCGCAGCCCCCCATCGCCCGCCGCGACGCCGGACGCGACCCCTACGCCTGGCTGGAGGAGCGC
GACGCCCCGGAGGTGCTCGACTACCTGAAGGCCGAGAACGCCTACCTGGATAGCGAACTGGCCGACCAGGCC
GGGTTGCGCGAGACCCTGTTCGAGGAGATCAGGGGACGCATCCGCGAGACCGACCTGTCGTTGCCCAGTCCC
TGGGGTCCGTGGCTGTACTACCAGCGCACCACCGCCGGCGATGAATACCCGCGCCACTACCGCTGCCCACGT
CCGGCGGACGGCAGCCTGGCGGTCGACGAAGGCGCCGAGCAACTGTTGCTCGATCCCAACCAGTTGGCCGAC
GGCGGCTTCCTCTCCCTCGGCGCCTTCAGCATCAGCCCCGACCAGAGCCTGCTGGCCTACAGCCTGGACACC
AGCGGCGACGAGATCTACCGCCTGTTCGTCAAGGACCTCGCCAGCGGCGCGGTGCAGGCCCTGCCCTTCGAC
GACTGCGATGGCAGCCTGACCTGGGCCAACGATAACCGTACGCTGTTCTTCGGCGAACTGGACGACACCCAC
CGCCCGCACAAGCTCTATCGCCACCGCCTGGGCGAGGCCGGCGCCGAGCTGGTATTCGAGGAAGGCGACGGG
CGCTTCTTCCTGCACTGCTACCGCTCCAGCTCGGAACGCCAGCTGATCCTCCTGCTCAACAGCAAGACCACC
AGCGAGGCCTGGGTGCTCGACGCCGACCAGCCGCAGGGAACGTTCCGCTGCCTGGCGCCGCGCGAGGAAGGC
CATGAGTACTACCCCGACCACGGTCGCCTCGACGGCCGGGGCCTGTGGCTGATCCGCAGCAACCAGGCGGGG
ATCAACTTCGCCCTCTACCAGGCCGAGGAGTCGCGGCCGACTCGCGAGCACTGGCAACTGCGCGTGGCCCAC
GACCCGCAGCGGACCCTGGAAGATGTCAGCCTGAACGCCGAGGCGGTGATCCTCGGCCTGCGCGACGGCGGC
CTGCCGGTGATCGAGGTGCAACCGCAGGGCCTGCCGGCCTACCGCGTGCAGTTGCCGGACGCCGCCTACAGC
CTCTACGTGCAGGACAGCCTGGAATTCGACAGCCCCTGCGTGCGACTGCGCTACGAGGCCCTGAACCGTCCG
GCGCAGGTACGCCAGCTGAACCTCGCCGATGGCACGCAGACCGTCCTCAAGCAGACCCCGGTGGAAGGCCCC
TTCGACGCCGACGCCTACGCCAGTCGGCGCATCTGGGCCAGCAGCGGCGACGGCACGCAGGTGCCGGTCAGC
CTGGTGGCGCGCAAGGAAGTCCTCGACGGCATCGCCGCCGGGCGCCCCGCGCCGCTCTATCTCTATGGCTAC
GGCGCCTACGGGCATAGCCTCGATCCCTGGTTCTCCCACGCCCGCCTGAGCCTGCTCGAACGCGGCTTCGTC
TTCGCCATCGCCCATGTCCGTGGCGGCGGCGAACTGGGCGAAGCCTGGTACCGGGCCGGCAAGCTGGAACAC
AAGCAGAACAGCTTCGACGACTTCATCGCCTGCGCCGAGCACCTGCTCGCCGAGGGCTACTGCCGTCCCGAG
GGACTCGCCATCAGCGGCGGCAGCGCCGGCGGGCTGTTGATCGGCGCGGTGCTCAACCAGCGCCCGCAACTA
TTCGGCGCGGCGATCGCCGAGGTGCCGTTCGTCGACGTGCTGAACAGCATGCTCAATCCGGACCTGCCGCTG
ACCGTCACCGAATACGATGAGTGGGGCAACCCGCAGGAGCCCGAGGTGCATGCGCGGATCGCCGCCTACGCG
CCCTACGAGAACGTCAGGGCCCAGGACTACCCGCACCTGCTGGTGGTCGCCGGCTACAACGACAGCCGCGTG
CAGTACTGGGAAGCCGCCAAGTGGGTGGCGAAACTGCGGGCGACCAGGACCGACGCCAACCTGCTGCTGCTC
AAGACCGACCTCGGCGCCGGCCACGGCGGCATGAGCGGCCGCTACCAGGGGCTGAAGGACGTGGCGCTGGAA
TACGCCTTCCTGCTCAAGGTCCTCGGCCTGGTATGA
Translation:
MPHPQPPIARRDAGRDPYAWLEERDAPEVLDYLKAENAYLDSELADQAGLRETLFEEIRGRIRETDLSLPSP
WGPWLYYQRTTAGDEYPRHYRCPRPADGSLAVDEGAEQLLLDPNQLADGGFLSLGAFSISPDQSLLAYSLDT
SGDEIYRLFVKDLASGAVQALPFDDCDGSLTWANDNRTLFFGELDDTHRPHKLYRHRLGEAGAELVFEEGDG
RFFLHCYRSSSERQLILLLNSKTTSEAWVLDADQPQGTFRCLAPREEGHEYYPDHGRLDGRGLWLIRSNQAG
INFALYQAEESRPTREHWQLRVAHDPQRTLEDVSLNAEAVILGLRDGGLPVIEVQPQGLPAYRVQLPDAAYS
LYVQDSLEFDSPCVRLRYEALNRPAQVRQLNLADGTQTVLKQTPVEGPFDADAYASRRIWASSGDGTQVPVS
LVARKEVLDGIAAGRPAPLYLYGYGAYGHSLDPWFSHARLSLLERGFVFAIAHVRGGGELGEAWYRAGKLEH
KQNSFDDFIACAEHLLAEGYCRPEGLAISGGSAGGLLIGAVLNQRPQLFGAAIAEVPFVDVLNSMLNPDLPL
TVTEYDEWGNPQEPEVHARIAAYAPYENVRAQDYPHLLVVAGYNDSRVQYWEAAKWVAKLRATRTDANLLLL
KTDLGAGHGGMSGRYQGLKDVALEYAFLLKVLGLV*
AnnotationID:300GeneID:290
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 21:09:20
Gene Name:
Confidence Code:3
GeneProduct:putative oligopeptidase
Cell Localization:()
Synonyms:PA1304
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative protease
Functional Category Confidence Code:5
COGs:COG1770,COG1505,pfam02897
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57377.1| (AE016870) protease II [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 685

 Score = 1046 bits (2706), Expect = 0.0
 Identities = 504/677 (74%), Positives = 577/677 (85%), Gaps = 8/677 (1%)

>gb|AAN70156.1|AE016655_1 (AE016791) peptidase, putative [Pseudomonas putida KT2440]
          Length = 680

 Score = 1046 bits (2705), Expect = 0.0
 Identities = 513/681 (75%), Positives = 575/681 (84%), Gaps = 6/681 (0%)

>dbj|BAB75610.1| (AP003594) protease II [Nostoc sp. PCC 7120]
          Length = 688

 Score =  526 bits (1355), Expect = e-148
 Identities = 289/691 (41%), Positives = 418/691 (60%), Gaps = 30/691 (4%)






 
Structural Features:
COG1770, PtrB, Protease II [Amino acid transport and metabolism]
CD-Length = 682 residues,  87.8% aligned
Score =  792 bits (2046), Expect = 0.0
Identities = 352/698 (50%), Positives = 448/698 (64%), Gaps = 31/698 (4%)

COG1505, COG1505, Serine proteases of the peptidase family S9A 
[Amino acid transport and metabolism]
CD-Length = 648 residues,  86.4% aligned
Score =  254 bits (651), Expect = 2e-68
Identities = 204/687 (29%), Positives = 313/687 (45%), Gaps = 63/687 (9%)

pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, 
N-terminal beta-propeller domain
CD-Length = 413 residues,  81.1% aligned
Score =  191 bits (487), Expect = 2e-49
Identities = 132/423 (31%), Positives = 195/423 (46%), Gaps = 37/423 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:583




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17725




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37494




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2923_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:290
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
476
                           PA1304_tr
                           translation of PA1304
                           683
                           99.85
                           99.85
                           0
                           3614.0
     

     
     
24750
                           gb|AAG04693.1|AE004560_1
                           (AE004560) probable oligopeptidase [Pseudomonas aeruginosa PAO1]
                           683
                           99.85
                           99.85
                           0
                           3614.0
     

     
     
24752
                           gb|AAN70156.1|AE016655_1
                           (AE016791) peptidase, putative [Pseudomonas putida KT2440]
                           685
                           75.18
                           84.23
                           7
                           2712.0
     

     
     
24751
                           gb|AAO57377.1|
                           (AE016870) protease II [Pseudomonas syringae pv. tomato str. DC3000]
                           690
                           73.04
                           83.76
                           12
                           2706.0
     

     
     
24753
                           dbj|BAC88070.1|
                           (AP006568) oligopeptidase [Gloeobacter violaceus PCC 7421]
                           698
                           45.12
                           60.74
                           35
                           1447.0
     

     






      

          
GC ORFID: 43292How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1304Glimmer Score: 

          
Start: 736089Stop: 734038

          
Length: 2052


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1304 translation of PA1304Homolog Bit Score 1396.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1535 (ORF: BLASTX 1061.0), t_PA1304 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCATCCGCAGCCCCCCATCGCCCGCCGCGACGCCGGACGCGACCCCTACGCCTGGCTGGAGGAGCGC 
GACGCCCCGGAGGTGCTCGACTACCTGAAGGCCGAGAACGCCTACCTGGATAGCGAACTGGCCGACCAGGCC 
GGGTTGCGCGAGACCCTGTTCGAGGAGATCAGGGGACGCATCCGCGAGACCGACCTGTCGTTGCCCAGTCCC 
TGGGGTCCGTGGCTGTACTACCAGCGCACCACCGCCGGCGATGAATACCCGCGCCACTACCGCTGCCCACGT 
CCGGCGGACGGCAGCCTGGCGGTCGACGAAGGCGCCGAGCAACTGTTGCTCGATCCCAACCAGTTGGCCGAC 
GGCGGCTTCCTCTCCCTCGGCGCCTTCAGCATCAGCCCCGACCAGAGCCTGCTGGCCTACAGCCTGGACACC 
AGCGGCGACGAGATCTACCGCCTGTTCGTCAAGGACCTCGCCAGCGGCGCGGTGCAGGCCCTGCCCTTCGAC 
GACTGCGATGGCAGCCTGACCTGGGCCAACGATAACCGTACGCTGTTCTTCGGCGAACTGGACGACACCCAC 
CGCCCGCACAAGCTCTATCGCCACCGCCTGGGCGAGGCCGGCGCCGAGCTGGTATTCGAGGAAGGCGACGGG 
CGCTTCTTCCTGCACTGCTACCGCTCCAGCTCGGAACGCCAGCTGATCCTCCTGCTCAACAGCAAGACCACC 
AGCGAGGCCTGGGTGCTCGACGCCGACCAGCCGCAGGGAACGTTCCGCTGCCTGGCGCCGCGCGAGGAAGGC 
CATGAGTACTACCCCGACCACGGTCGCCTCGACGGCCGGGGCCTGTGGCTGATCCGCAGCAACCAGGCGGGG 
ATCAACTTCGCCCTCTACCAGGCCGAGGAGTCGCGGCCGACTCGCGAGCACTGGCAACTGCGCGTGGCCCAC 
GACCCGCAGCGGACCCTGGAAGATGTCAGCCTGAACGCCGAGGCGGTGATCCTCGGCCTGCGCGACGGCGGC 
CTGCCGGTGATCGAGGTGCAACCGCAGGGCCTGCCGGCCTACCGCGTGCAGTTGCCGGACGCCGCCTACAGC 
CTCTACGTGCAGGACAGCCTGGAATTCGACAGCCCCTGCGTGCGACTGCGCTACGAGGCCCTGAACCGTCCG 
GCGCAGGTACGCCAGCTGAACCTCGCCGATGGCACGCAGACCGTCCTCAAGCAGACCCCGGTGGAAGGCCCC 
TTCGACGCCGACGCCTACGCCAGTCGGCGCATCTGGGCCAGCAGCGGCGACGGCACGCAGGTGCCGGTCAGC 
CTGGTGGCGCGCAAGGAAGTCCTCGACGGCATCGCCGCCGGGCGCCCCGCGCCGCTCTATCTCTATGGCTAC 
GGCGCCTACGGGCATAGCCTCGATCCCTGGTTCTCCCACGCCCGCCTGAGCCTGCTCGAACGCGGCTTCGTC 
TTCGCCATCGCCCATGTCCGTGGCGGCGGCGAACTGGGCGAAGCCTGGTACCGGGCCGGCAAGCTGGAACAC 
AAGCAGAACAGCTTCGACGACTTCATCGCCTGCGCCGAGCACCTGCTCGCCGAGGGCTACTGCCGTCCCGAG 
GGACTCGCCATCAGCGGCGGCAGCGCCGGCGGGCTGTTGATCGGCGCGGTGCTCAACCAGCGCCCGCAACTA 
TTCGGCGCGGCGATCGCCGAGGTGCCGTTCGTCGACGTGCTGAACAGCATGCTCAATCCGGACCTGCCGCTG 
ACCGTCACCGAATACGATGAGTGGGGCAACCCGCAGGAGCCCGAGGTGCATGCGCGGATCGCCGCCTACGCG 
CCCTACGAGAACGTCAGGGCCCAGGACTACCCGCACCTGCTGGTGGTCGCCGGCTACAACGACAGCCGCGTG 
CAGTACTGGGAAGCCGCCAAGTGGGTGGCGAAACTGCGGGCGACCAGGACCGACGCCAACCTGCTGCTGCTC 
AAGACCGACCTCGGCGCCGGCCACGGCGGCATGAGCGGCCGCTACCAGGGGCTGAAGGACGTGGCGCTGGAA 
TACGCCTTCCTGCTCAAGGTCCTCGGCCTGGTATGA