ViewGene

Locus Name:
GeneID:
Location:

GeneID:29
TrivialName: PA14_34130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34130
PAO1 Ortholog Locus:PA2361
Sequence Length:3816
Protein Length:1271
Start: 3032557
Stop: 3036372
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05749.1|AE004662_4 (AE004662) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1243/1271 (97%), Positives = 1258/1271 (98%)
Sequence:
ATGAGCGGCGCGACGCTGTTCATGCTGGTTCTCCTCCTGCTGCTGCTGGCGCTGCTGCTGGGGGCGCTGGGC
TGGTGGTGGCGGACCCGGGGCGGTACGGAGATCCGCAGCTTCTACGCGGCGGTCCGGCAGATGGAGCGCGAG
CAGGGCTGGCAGGGCCGCTACGAAGCGCCCTGGCTGCTGATGCTCGGCAACGAGACCGAGGGCGAGCAGTTG
TGCGCTACCTGGCGCCTGCTGCCGGTGGCGCGTCCGGCCTGGTTCGGCCGCTGGTGGTCGGACGGCGAGGGG
GCGATCCTGCTGGTGCCCGAGTCGGTGTTCCTGCCCGACGAGGGCCTGCGCCGGCAAAGCGGCGCCTGGCTG
CGCCTGTTGCGTCTGTTCCTGCGCCTGCGCGGCAGGCGCGCGCTGGACGGGGTGGTCTGGAACATTCCGCTG
GCGCGGTTGCAGGATGGCGAGCAGGCGGCCGCCCTCGGCCTCGCCGCCCGTCGTCGCTACGTGGAGCTGACC
CAGCGCCTTGGCCTGAGCCTGCCGGTGTACGTGGTGATCACTGGCCTGGAAGACCTGCCGGGTTTCCAGGAA
CTTCTCGCGGCGCTGCCCGAGGAGGCGCGCGAGCGCGCCCTCGGCTGGTCCTCGCCGTTCGCCGCCGAGGCG
GCCTGGCAGTCGCGCTGGTGCGAGCAGGCGCTGGAGGAAATCACCGCCACCCTGACCGAGTCGATCGTCGAA
CTCGGTACCTTGCGCGGCCAGGTGAACAACGACCTGTATTGCCTGCCGCCACGCCTGGAAAGCCTCCGCGGT
TCGTTGCAGGCGCTGCTCGAACCGGTCTTCCAGGGCAACGCCAGGGGTGAGGCGCCGCGCTTTCGCGGTCTC
TACCTGAGCGGCAGCGAGGCGGCGGGGGCGGCAAGCGACGAAGCCCTGCCGGCGGTCGACGCGCCGCGTCGG
CGCAGCAGCTTCGCCAGCCAACTGTGGGCACGGCGGATCCTTGCCGAGGAAGGCCTGGCCCAGGCGGTGCCG
CGCATCCTCCAGCTGCGCCAGCGCTGGCAGCGCGGTATCGGCCTCGTTGCGCTGTGCCTGTGCCTGCTCTGG
GGCGGCCTGATGACCTGGGTCTGGCGTGACGCGCTGCGCGACGCCGGCGAACTGTCGCAACTGCTGCATGGC
GCCAGCGAGCGCTACCAGCCGCTCGACGACGACACCCGGCGCGCCGCCCAGGTCCGGCAGAACGTCCAGGCC
TGGTGGCAACTGGTGGCACAGGCGCCGCGCTGGCGCTTCACCTCGCTGGCGTTCCCCAGTTCCTGGTTTTCC
TCCCTGGATGCACGTATCGACAGCGCGTATCGCCGCGTTTCCGAGCGCCTGCTGGTGCGCCCGCTGCGCAGC
CTGCTGGAAGGCGAGGCGAGCGACCTGCGGGCGATCCGCAGCGACGGCCAGCCCGGCCTGAAGGAGGGCGAC
GACCCCAGCCAGTGGAAGGACTACCTGGCGGCGAAGGACCTGGTCGCCCGCGCCACTACCCTGGAGCGCCAC
AATCGCCTGTTCGCCCAGGCCATCGACAACCGCAAGACGCCGCTCGACGATCTCCTGCAACTGAGCAACGAC
GCCCTGGGCAGCAGCTACAACGGCGGCAGCCTGGCGCGCCTGGCCTACTACAACCGCACGCTGTTCGCCGAG
CGTCCGGCCGATCTCGCCGCCCTCGACCTGGGCCGGGTCGGCGCCACGGCGGCGGATAACTTCCATGACCTG
ATGGCACGCTGGCTGAACGCCTACTTTCTCACCGACAGCCTGGAACGCACCGGCAATGCCCTGACCCAGGAA
CTCGCGCAGCTCGGCCAGGAACGAGATGCCACGGCGGCCCAGTTGCTGGGGGTCGGCGAATTGATCAACCAC
CTGCAGCAGCAGGTCAACCGCATCAACCTGATCTGGGGCAATGGCGTCGGCCAGGATCTCGTCCCTGGCTAC
CAGAACCTGCTCAAGAGCGCCCAGCAAAGCAGCCTGCTGGGAGATCGCGTGGAGGAACTGCAGAACCTCACG
GTGCAGTTGCAGCAGCAGTTCCGCAGCGAATGGATCGCGCCTCCGGAGGCTGCCGGCGACGGCCTGCTGGTG
AAACAGGGTGCGACGCTCAAGCTGGCCGATGACCTGCTCGGCCTGAAACGCGCCATCGATGACCTGAAGACC
AAGGACTTCGTCTCCGTGGCCCTGGCCGGCAAGACACTGGCGGAGCACTCCTTGCTGAGCATCGACGACATC
GGCGTGACTCAGGCGTTGAGCTTCTTCAACGACTTCAGCGGCTACTACGAGAGCACCCTGCCGTCGCTCAAC
CCGCGCTATCGCTACTCGGTCCTGCACGCCGCCGCCAGCGCGACGACCGAGGCCATGTGGCAGAGCCTCGGG
CCGCGCAGTCGCAGCCTGACCAGCCGCAATGCCTCGCGCTTCGACGTGCAGGTCAAGCAGGTCCAGGCATTG
CAGGCGGCGCTGCTGGAGTTGCAGGACATGCAGGCCGGCGCGCGCCTGCTGGCCAGCCTCAACGCGCTGGCC
GTGGCCGATATCGGCCAGGCCCTGCGCGACATCGACGAGCAGGCGGTGCTGCGCGAGCCGGTCGATTTCAGC
CGTTGGTCGGGCGCGCCGAATTTCGGCCTGCAGGCGTTCCGCGCCCAGGACAGCGCCGAGCTGAAGCAGAGC
CTGACCAGCCAGTTCAATGCCATGGCCGCGGTCGCCGAGCGCCACGCCCCGGCGCTGGAGTGGCTGCAGGCG
CAGCAGTCCAGCCTGGCCACCGCCGACTACAACGCGTTCGTGCGCTTCAGCGCGCTCAACGCCGAACTGCAG
AAATTCAAGGCCGACAACCCGGCGAGCACCGCGGCGCAGCTGGCGAAGCTGGTGGGTAACGATTTCAACCAG
ATGGACATCGGCAGTTGCGCCGACATTCTCAACGGCGTGCTCCTGCCGTCCAGCCGCAGCGACCTGGCGACG
CGCCTGGTGGACCTGCGCCAGGGCGCGCTCGGGCGCTGCCAGTCGTTGCAACAGCAGCAGGCGGCGCAGGCC
TGGAAGGACCTCGCCGACTACTTCAACCAGTACCTCGCCGGACGCTTCCCGTTCGCCTACAGCCTGGAAGCG
GCCGATGCCGAGCCGGGGCGGGTGCGGCACCTGCTGAAGCTGATGGAGACGCGCTTGCCGCAGGTGCGCGAA
GGGCTGGCCCAGGTTCGCTCGCCGGACCTGCCGGCCGCCGAGGACTTCGTCCGCCGCCTGGAGCAGGCGCAG
CGCTGGCTCGGCCCGCTGTTCGAGCGCGACAAGTCGGGCCTGCTCGGCGTCGCCCTGGACATCGACTGGCGC
AGCGACCGCAGCCTGGAACGCGGCGCCGACCAGGTGATCGCCTGGAGCCTGTACTCGGGCGACCAGGAAAGC
CGGTTCCCCGGCGCGCAGGACAAGGGCCTGACCTGGAACGTCGGCGATCCGCTGAAGATCATGCTGCGCTGG
GCGAAGAACGGCTCGCAGCGTCCGGCAGACGACCCGCGCCAGGCCAGCCTGGCGGTGGCCGACCTCGAGGCC
GGCTGGAGCTACCAGGGCTCCTGGGCGCTGCTGCGCATGATGCGTGCGCACTTCTCCCGGCAGCGCCCGCCG
AACGTCGACTACACGGAGTTTCCGCTGGTCCTGCAACTGCCGGTGTATGCGCCCTACAGCCCGGAAAACGAG
GCGCGGATGTTCCTCCGCCTGTCGTTGATGAGCCTGGGCGGCAAGACCCCGCTGTCCATCCAGCCGCTGCCG
GTGCGCGCGCCGCAATCGCCGTTCGCGACGCTGTTGCCGGCCACCGTCGCCAGCACCGGAGGTATCCCATGA
Translation:
MSGATLFMLVLLLLLLALLLGALGWWWRTRGGTEIRSFYAAVRQMEREQGWQGRYEAPWLLMLGNETEGEQL
CATWRLLPVARPAWFGRWWSDGEGAILLVPESVFLPDEGLRRQSGAWLRLLRLFLRLRGRRALDGVVWNIPL
ARLQDGEQAAALGLAARRRYVELTQRLGLSLPVYVVITGLEDLPGFQELLAALPEEARERALGWSSPFAAEA
AWQSRWCEQALEEITATLTESIVELGTLRGQVNNDLYCLPPRLESLRGSLQALLEPVFQGNARGEAPRFRGL
YLSGSEAAGAASDEALPAVDAPRRRSSFASQLWARRILAEEGLAQAVPRILQLRQRWQRGIGLVALCLCLLW
GGLMTWVWRDALRDAGELSQLLHGASERYQPLDDDTRRAAQVRQNVQAWWQLVAQAPRWRFTSLAFPSSWFS
SLDARIDSAYRRVSERLLVRPLRSLLEGEASDLRAIRSDGQPGLKEGDDPSQWKDYLAAKDLVARATTLERH
NRLFAQAIDNRKTPLDDLLQLSNDALGSSYNGGSLARLAYYNRTLFAERPADLAALDLGRVGATAADNFHDL
MARWLNAYFLTDSLERTGNALTQELAQLGQERDATAAQLLGVGELINHLQQQVNRINLIWGNGVGQDLVPGY
QNLLKSAQQSSLLGDRVEELQNLTVQLQQQFRSEWIAPPEAAGDGLLVKQGATLKLADDLLGLKRAIDDLKT
KDFVSVALAGKTLAEHSLLSIDDIGVTQALSFFNDFSGYYESTLPSLNPRYRYSVLHAAASATTEAMWQSLG
PRSRSLTSRNASRFDVQVKQVQALQAALLELQDMQAGARLLASLNALAVADIGQALRDIDEQAVLREPVDFS
RWSGAPNFGLQAFRAQDSAELKQSLTSQFNAMAAVAERHAPALEWLQAQQSSLATADYNAFVRFSALNAELQ
KFKADNPASTAAQLAKLVGNDFNQMDIGSCADILNGVLLPSSRSDLATRLVDLRQGALGRCQSLQQQQAAQA
WKDLADYFNQYLAGRFPFAYSLEAADAEPGRVRHLLKLMETRLPQVREGLAQVRSPDLPAAEDFVRRLEQAQ
RWLGPLFERDKSGLLGVALDIDWRSDRSLERGADQVIAWSLYSGDQESRFPGAQDKGLTWNVGDPLKIMLRW
AKNGSQRPADDPRQASLAVADLEAGWSYQGSWALLRMMRAHFSRQRPPNVDYTEFPLVLQLPVYAPYSPENE
ARMFLRLSLMSLGGKTPLSIQPLPVRAPQSPFATLLPATVASTGGIP*
AnnotationID:39GeneID:29
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2361
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:61
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17203
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32908
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:29_cdd.html
URL:
Homologs By Global Alignment
Gene ID:29

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
56 PA2361_tr translation of PA2361 1271 97.79 98.97 0 6398.0
11054 gb|AAG05749.1|AE004662_4 (AE004662) hypothetical protein PA2361 [Pseudomonas aeruginosa PAO1] 1271 97.79 98.97 0 6398.0
GC ORFID: 43031How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2361Glimmer Score:
Start: 1921359Stop: 1917544
Length: 3816
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2361 translation of PA2361Homolog Bit Score 2469.0
Other Homologs: t_PA2361 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGGCGCGACGCTGTTCATGCTGGTTCTCCTCCTGCTGCTGCTGGCGCTGCTGCTGGGGGCGCTGGGC
TGGTGGTGGCGGACCCGGGGCGGTACGGAGATCCGCAGCTTCTACGCGGCGGTCCGGCAGATGGAGCGCGAG
CAGGGCTGGCAGGGCCGCTACGAAGCGCCCTGGCTGCTGATGCTCGGCAACGAGACCGAGGGCGAGCAGTTG
TGCGCTACCTGGCGCCTGCTGCCGGTGGCGCGTCCGGCCTGGTTCGGCCGCTGGTGGTCGGACGGCGAGGGG
GCGATCCTGCTGGTGCCCGAGTCGGTGTTCCTGCCCGACGAGGGCCTGCGCCGGCAAAGCGGCGCCTGGCTG
CGCCTGTTGCGTCTGTTCCTGCGCCTGCGCGGCAGGCGCGCGCTGGACGGGGTGGTCTGGAACATTCCGCTG
GCGCGGTTGCAGGATGGCGAGCAGGCGGCCGCCCTCGGCCTCGCCGCCCGTCGTCGCTACGTGGAGCTGACC
CAGCGCCTTGGCCTGAGCCTGCCGGTGTACGTGGTGATCACTGGCCTGGAAGACCTGCCGGGTTTCCAGGAA
CTTCTCGCGGCGCTGCCCGAGGAGGCGCGCGAGCGCGCCCTCGGCTGGTCCTCGCCGTTCGCCGCCGAGGCG
GCCTGGCAGTCGCGCTGGTGCGAGCAGGCGCTGGAGGAAATCACCGCCACCCTGACCGAGTCGATCGTCGAA
CTCGGTACCTTGCGCGGCCAGGTGAACAACGACCTGTATTGCCTGCCGCCACGCCTGGAAAGCCTCCGCGGT
TCGTTGCAGGCGCTGCTCGAACCGGTCTTCCAGGGCAACGCCAGGGGTGAGGCGCCGCGCTTTCGCGGTCTC
TACCTGAGCGGCAGCGAGGCGGCGGGGGCGGCAAGCGACGAAGCCCTGCCGGCGGTCGACGCGCCGCGTCGG
CGCAGCAGCTTCGCCAGCCAACTGTGGGCACGGCGGATCCTTGCCGAGGAAGGCCTGGCCCAGGCGGTGCCG
CGCATCCTCCAGCTGCGCCAGCGCTGGCAGCGCGGTATCGGCCTCGTTGCGCTGTGCCTGTGCCTGCTCTGG
GGCGGCCTGATGACCTGGGTCTGGCGTGACGCGCTGCGCGACGCCGGCGAACTGTCGCAACTGCTGCATGGC
GCCAGCGAGCGCTACCAGCCGCTCGACGACGACACCCGGCGCGCCGCCCAGGTCCGGCAGAACGTCCAGGCC
TGGTGGCAACTGGTGGCACAGGCGCCGCGCTGGCGCTTCACCTCGCTGGCGTTCCCCAGTTCCTGGTTTTCC
TCCCTGGATGCACGTATCGACAGCGCGTATCGCCGCGTTTCCGAGCGCCTGCTGGTGCGCCCGCTGCGCAGC
CTGCTGGAAGGCGAGGCGAGCGACCTGCGGGCGATCCGCAGCGACGGCCAGCCCGGCCTGAAGGAGGGCGAC
GACCCCAGCCAGTGGAAGGACTACCTGGCGGCGAAGGACCTGGTCGCCCGCGCCACTACCCTGGAGCGCCAC
AATCGCCTGTTCGCCCAGGCCATCGACAACCGCAAGACGCCGCTCGACGATCTCCTGCAACTGAGCAACGAC
GCCCTGGGCAGCAGCTACAACGGCGGCAGCCTGGCGCGCCTGGCCTACTACAACCGCACGCTGTTCGCCGAG
CGTCCGGCCGATCTCGCCGCCCTCGACCTGGGCCGGGTCGGCGCCACGGCGGCGGATAACTTCCATGACCTG
ATGGCACGCTGGCTGAACGCCTACTTTCTCACCGACAGCCTGGAACGCACCGGCAATGCCCTGACCCAGGAA
CTCGCGCAGCTCGGCCAGGAACGAGATGCCACGGCGGCCCAGTTGCTGGGGGTCGGCGAATTGATCAACCAC
CTGCAGCAGCAGGTCAACCGCATCAACCTGATCTGGGGCAATGGCGTCGGCCAGGATCTCGTCCCTGGCTAC
CAGAACCTGCTCAAGAGCGCCCAGCAAAGCAGCCTGCTGGGAGATCGCGTGGAGGAACTGCAGAACCTCACG
GTGCAGTTGCAGCAGCAGTTCCGCAGCGAATGGATCGCGCCTCCGGAGGCTGCCGGCGACGGCCTGCTGGTG
AAACAGGGTGCGACGCTCAAGCTGGCCGATGACCTGCTCGGCCTGAAACGCGCCATCGATGACCTGAAGACC
AAGGACTTCGTCTCCGTGGCCCTGGCCGGCAAGACACTGGCGGAGCACTCCTTGCTGAGCATCGACGACATC
GGCGTGACTCAGGCGTTGAGCTTCTTCAACGACTTCAGCGGCTACTACGAGAGCACCCTGCCGTCGCTCAAC
CCGCGCTATCGCTACTCGGTCCTGCACGCCGCCGCCAGCGCGACGACCGAGGCCATGTGGCAGAGCCTCGGG
CCGCGCAGTCGCAGCCTGACCAGCCGCAATGCCTCGCGCTTCGACGTGCAGGTCAAGCAGGTCCAGGCATTG
CAGGCGGCGCTGCTGGAGTTGCAGGACATGCAGGCCGGCGCGCGCCTGCTGGCCAGCCTCAACGCGCTGGCC
GTGGCCGATATCGGCCAGGCCCTGCGCGACATCGACGAGCAGGCGGTGCTGCGCGAGCCGGTCGATTTCAGC
CGTTGGTCGGGCGCGCCGAATTTCGGCCTGCAGGCGTTCCGCGCCCAGGACAGCGCCGAGCTGAAGCAGAGC
CTGACCAGCCAGTTCAATGCCATGGCCGCGGTCGCCGAGCGCCACGCCCCGGCGCTGGAGTGGCTGCAGGCG
CAGCAGTCCAGCCTGGCCACCGCCGACTACAACGCGTTCGTGCGCTTCAGCGCGCTCAACGCCGAACTGCAG
AAATTCAAGGCCGACAACCCGGCGAGCACCGCGGCGCAGCTGGCGAAGCTGGTGGGTAACGATTTCAACCAG
ATGGACATCGGCAGTTGCGCCGACATTCTCAACGGCGTGCTCCTGCCGTCCAGCCGCAGCGACCTGGCGACG
CGCCTGGTGGACCTGCGCCAGGGCGCGCTCGGGCGCTGCCAGTCGTTGCAACAGCAGCAGGCGGCGCAGGCC
TGGAAGGACCTCGCCGACTACTTCAACCAGTACCTCGCCGGACGCTTCCCGTTCGCCTACAGCCTGGAAGCG
GCCGATGCCGAGCCGGGGCGGGTGCGGCACCTGCTGAAGCTGATGGAGACGCGCTTGCCGCAGGTGCGCGAA
GGGCTGGCCCAGGTTCGCTCGCCGGACCTGCCGGCCGCCGAGGACTTCGTCCGCCGCCTGGAGCAGGCGCAG
CGCTGGCTCGGCCCGCTGTTCGAGCGCGACAAGTCGGGCCTGCTCGGCGTCGCCCTGGACATCGACTGGCGC
AGCGACCGCAGCCTGGAACGCGGCGCCGACCAGGTGATCGCCTGGAGCCTGTACTCGGGCGACCAGGAAAGC
CGGTTCCCCGGCGCGCAGGACAAGGGCCTGACCTGGAACGTCGGCGATCCGCTGAAGATCATGCTGCGCTGG
GCGAAGAACGGCTCGCAGCGTCCGGCAGACGACCCGCGCCAGGCCAGCCTGGCGGTGGCCGACCTCGAGGCC
GGCTGGAGCTACCAGGGCTCCTGGGCGCTGCTGCGCATGATGCGTGCGCACTTCTCCCGGCAGCGCCCGCCG
AACGTCGACTACACGGAGTTTCCGCTGGTCCTGCAACTGCCGGTGTATGCGCCCTACAGCCCGGAAAACGAG
GCGCGGATGTTCCTCCGCCTGTCGTTGATGAGCCTGGGCGGCAAGACCCCGCTGTCCATCCAGCCGCTGCCG
GTGCGCGCGCCGCAATCGCCGTTCGCGACGCTGTTGCCGGCCACCGTCGCCAGCACCGGAGGTATCCCATGA