ViewGene
Locus Name:
GeneID:
Location:

GeneID:2899
TrivialName: PA14_63910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63910
PAO1 Ortholog Locus:PA4834
Sequence Length:855
Protein Length:284
Start: 5696256
Stop: 5695402
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08219.1|AE004896_9 (AE004896) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 283/284 (99%), Positives = 284/284 (100%)
Sequence:
GTGGTGCTCGACCTGCTGAAGAGCGGGGTGCTGCTGGCGGTGCTGGCGTCCTTCACCTTCAGCGTGATGAAC
GCCCTGGTCAAGGAAGCCAGCGCCACCCTGCCGGCTGCCGAGATCGTGTTCTTCCGCAGCGCCATCGGTACC
CTGCTGATCTACCTGCTGATGCGCCAGGCCGGTGTCGCCCTGTCGCGCCAGGGCGTGCCGATGCTGCTGGTG
CGCGGGGTGATGGGGGCGCTGTACCTGGTCTGCTATTTCTACGCCATCGCCCACATCCCGCTGGCGGACGCG
AGCATCCTGGCGCACATGTCGCCGTTCTTCGTCATCCTCTTCTCCGCGCTGTTCCTCGGCGAGCGGATTCCC
CGGGCGGTCTATTGGCTGTTGCTGGTGGTGGTGCTCGGCGCGCTGATGATCGTCAAGCCGTTCAGCTATTCC
AGCTACTCGGTATACGCCGTGGTCGGCCTGCTCAGCGCGGTGTTCGCCGCCGGTGCCTCGGTGGCGATCCGC
CAACTGAGTGCGCGGCACCATACCTACGAGATCGTCTTCTACTTCCTGGCGGTGGCCACCCTGGTGGCCATC
CCGCTGATGTGGAGCGACTTCGTGGTGCCGGCGACGCTGCGTGAGTGGGGGCTGCTGCTGGCCATCGGGGTG
GTATCGCTGCTCGGCCAGGTGTTCCTAACCCGCGCCTTCAGTCACGAGAGCGCGACCATCGTTGCGGTGACC
CGCTATATCGGCATCGTCTTCAACGCCGGCTGGGGCTGGCTGTTCTGGAGCGAGGTGCCGGACGCGCTGACC
ATCGCTGGCGGCGTGCTGATCGTGGTGGCGTGCATCGCGCTGTCGCGGACGAAGAAGGGCTGA
Translation:
MVLDLLKSGVLLAVLASFTFSVMNALVKEASATLPAAEIVFFRSAIGTLLIYLLMRQAGVALSRQGVPMLLV
RGVMGALYLVCYFYAIAHIPLADASILAHMSPFFVILFSALFLGERIPRAVYWLLLVVVLGALMIVKPFSYS
SYSVYAVVGLLSAVFAAGASVAIRQLSARHHTYEIVFYFLAVATLVAIPLMWSDFVVPATLREWGLLLAIGV
VSLLGQVFLTRAFSHESATIVAVTRYIGIVFNAGWGWLFWSEVPDALTIAGGVLIVVACIALSRTKKG*
AnnotationID:2907GeneID:2899
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:46
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4834
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative permease
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO35934.1| (AE015940) transporter [Clostridium tetani E88]
          Length = 277

 Score =  338 bits (866), Expect = 3e-92
 Identities = 159/278 (57%), Positives = 219/278 (78%), Gaps = 2/278 (0%)

>emb|CAC90177.1| (AJ414147) putative membrane protein [Yersinia pestis CO92]
          Length = 281

 Score =  315 bits (807), Expect = 2e-85
 Identities = 155/279 (55%), Positives = 219/279 (78%), Gaps = 2/279 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14695




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22943




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35216




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2899_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2899
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4698
                           PA4834_tr
                           translation of PA4834
                           284
                           99.29
                           99.99
                           0
                           1394.0
     

     
     
135148
                           gb|AAG08219.1|AE004896_9
                           (AE004896) hypothetical protein PA4834 [Pseudomonas aeruginosa PAO1]
                           284
                           99.29
                           99.99
                           0
                           1394.0
     

     
     
135149
                           gb|AAO35934.1|
                           (AE015940) transporter [Clostridium tetani E88]
                           285
                           55.78
                           76.84
                           9
                           870.0
     

     
     
135150
                           gb|AAM86385.1|AE013886_10
                           (AE013886) hypothetical [Yersinia pestis KIM]
                           287
                           54.35
                           77.00
                           4
                           806.0
     

     
     
135151
                           emb|CAC90177.1|
                           (AJ414147) putative membrane protein [Yersinia pestis CO92]
                           287
                           54.00
                           76.30
                           9
                           809.0
     

     






      

          
GC ORFID: 45901How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4834Glimmer Score: 

          
Start: 4959936Stop: 4959082

          
Length: 855


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4834 translation of PA4834Homolog Bit Score 541.0

          
Other Homologs:  t_PA4834 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGTGCTCGACCTGCTGAAGAGCGGGGTGCTGCTGGCGGTGCTGGCGTCCTTCACCTTCAGCGTGATGAAC 
GCCCTGGTCAAGGAAGCCAGCGCCACCCTGCCGGCTGCCGAGATCGTGTTCTTCCGCAGCGCCATCGGTACC 
CTGCTGATCTACCTGCTGATGCGCCAGGCCGGTGTCGCCCTGTCGCGCCAGGGCGTGCCGATGCTGCTGGTG 
CGCGGGGTGATGGGGGCGCTGTACCTGGTCTGCTATTTCTACGCCATCGCCCACATCCCGCTGGCGGACGCG 
AGCATCCTGGCGCACATGTCGCCGTTCTTCGTCATCCTCTTCTCCGCGCTGTTCCTCGGCGAGCGGATTCCC 
CGGGCGGTCTATTGGCTGTTGCTGGTGGTGGTGCTCGGCGCGCTGATGATCGTCAAGCCGTTCAGCTATTCC 
AGCTACTCGGTATACGCCGTGGTCGGCCTGCTCAGCGCGGTGTTCGCCGCCGGTGCCTCGGTGGCGATCCGC 
CAACTGAGTGCGCGGCACCATACCTACGAGATCGTCTTCTACTTCCTGGCGGTGGCCACCCTGGTGGCCATC 
CCGCTGATGTGGAGCGACTTCGTGGTGCCGGCGACGCTGCGTGAGTGGGGGCTGCTGCTGGCCATCGGGGTG 
GTATCGCTGCTCGGCCAGGTGTTCCTAACCCGCGCCTTCAGTCACGAGAGCGCGACCATCGTTGCGGTGACC 
CGCTATATCGGCATCGTCTTCAACGCCGGCTGGGGCTGGCTGTTCTGGAGCGAGGTGCCGGACGCGCTGACC 
ATCGCTGGCGGCGTGCTGATCGTGGTGGCGTGCATCGCGCTGTCGCGGACGAAGAAGGGCTGA