ViewGene
Locus Name:
GeneID:
Location:

GeneID:2898
TrivialName: PA14_14680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14680
PAO1 Ortholog Locus:PA3818
Sequence Length:816
Protein Length:271
Start: 1251990
Stop: 1251175
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07205.1|AE004799_11 (AE004799) extragenic suppressor protein SuhB [Pseudomonas aeruginosa PAO1]
Identities = 271/271 (100%), Positives = 271/271 (100%)
Sequence:
ATGCAGCCTATGCTGAATATCGCCCTGCGCGCCGCTCGCAGCGCCGGTGAACTGATTTTCCGCTCCATCGAA
CGCCTGGATGTCATCTCGGTCAACGAGAAGGATGCCAAGGACTACGTGACCGAAGTCGATCGCGCCGCCGAG
CAGACCATCGTCGCCGCGCTGCGCAAGGCCTATCCGACTCACGCGATCATGGGCGAGGAAGGCGGCTTCATC
GAAGGCAGCGGCGAGGGTGCCGATTACCTCTGGGTGATCGATCCGCTGGACGGCACCACCAACTTCATCCAT
GGCGTACCGCACTTTGCCGTGAGCATCGCCTGCAAGTACAAGGGCCGCCTGGAGCACGCCGTGGTCCTCGAC
CCGGTGCGCCAGGAAGAATTCACCGCCAGCCGCGGCCGCGGCGCCGCCCTCAACGGTCGCCGCCTGCGCGTC
AGCGGCCGCAAGAGCCTGGAAGGCGCCCTGCTCGGCACCGGGTTCCCGTTCCGCGACAACCAGATCGACAAT
CTCGACAACTACCTGAACATGTTCCGCAGCCTGGTCGGCCAGACCGCCGGCATCCGCCGCGCCGGCGCCGCC
AGCCTGGACCTGGCCTACGTCGCCGCCGGACGCTACGACGCCTTCTGGGAATTCGGCCTGTCCGAATGGGAC
ATGGCGGCAGGCGCCCTGCTGGTACAGGAAGCCGGCGGCCTGGTGAGCGACTTCACCGGCAGCCACGAATTC
CTCGAGAAGGGTCACATCGTCGCCGGCAACACCAAATGCTTCAAGGCACTGCTGACCACCATCCAGCCGCAC
CTGCCGCCGTCGCTGAAGCGCTGA
Translation:
MQPMLNIALRAARSAGELIFRSIERLDVISVNEKDAKDYVTEVDRAAEQTIVAALRKAYPTHAIMGEEGGFI
EGSGEGADYLWVIDPLDGTTNFIHGVPHFAVSIACKYKGRLEHAVVLDPVRQEEFTASRGRGAALNGRRLRV
SGRKSLEGALLGTGFPFRDNQIDNLDNYLNMFRSLVGQTAGIRRAGAASLDLAYVAAGRYDAFWEFGLSEWD
MAAGALLVQEAGGLVSDFTGSHEFLEKGHIVAGNTKCFKALLTTIQPHLPPSLKR*
AnnotationID:2906GeneID:2898
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:32
Gene Name:
Confidence Code:2
GeneProduct:extragenic suppressor protein SuhB
Cell Localization:()
Synonyms:suhB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:SuhB
Functional Category Confidence Code:5
COGs:COG0483,pfam00459,KOG2951
Secondary Functional Category(ies):central intermediary metabolism
EC Number:3.1.3.25
Status:ACTIVE
Pathway:
Streptomycin biosynthesis;
Inositol phosphate metabolism;
Phosphatidylinositol signaling system.
Homology:
>gb|AAO54940.1| (AE016860) inositol-1-monophosphatase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 271

 Score =  484 bits (1245), Expect = e-136
 Identities = 236/271 (87%), Positives = 253/271 (93%)

>gb|AAN66463.1|AE016275_8 (AE016777) extragenic suppressor protein SuhB [Pseudomonas putida
           KT2440]
          Length = 272

 Score =  453 bits (1165), Expect = e-127
 Identities = 223/272 (81%), Positives = 245/272 (90%), Gaps = 1/272 (0%)

>gb|AAN81509.1|AE016764_191 (AE016764) Inositol-1-monophosphatase [Escherichia coli CFT073]
          Length = 267

 Score =  289 bits (740), Expect = 1e-77
 Identities = 149/271 (54%), Positives = 190/271 (70%), Gaps = 4/271 (1%)
Structural Features:
COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes 
of inositol monophosphatase family.
CD-Length = 260 residues, 100.0% aligned
Score =  271 bits (693), Expect = 2e-73
Identities = 136/264 (51%), Positives = 169/264 (64%), Gaps = 6/264 (2%)

pfam00459, Inositol_P, Inositol monophosphatase family.
CD-Length = 267 residues,  98.1% aligned
Score =  238 bits (608), Expect = 1e-63
Identities = 113/264 (42%), Positives = 150/264 (56%), Gaps = 3/264 (1%)

KOG2951, Inositol monophosphatase 
[Carbohydrate transport and metabolism]
CD-Length = 279 residues,  96.8% aligned
Score =  207 bits (527), Expect = 3e-54
Identities = 87/272 (31%), Positives = 138/272 (50%), Gaps = 6/272 (2%)
Genomic Context:






   
Comment:


















    ReferenceID:5799




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22941




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31738




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2898_cdd.html


    		




 
URL:

















    ReferenceID:38187




  
Author/Investigator(s):
        Nigou J, Dover LG, Besra GS.





  
Title:
        Purification and biochemical characterization of Mycobacterium tuberculosis SuhB, an inositol monophosphatase involved in inositol biosynthesis.




  
PubMed:
        11914086


MedLine:
        




    
Source:
Biochemistry. 2002 Apr 2;41(13):4392-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11914086&query_hl=4









           
Homologs By Global Alignment 

           

       



     
Gene ID:2898
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4697
                           PA3818_tr
                           translation of PA3818
                           271
                           99.99
                           99.99
                           0
                           1393.0
     

     
     
135084
                           gb|AAG07205.1|AE004799_11
                           (AE004799) extragenic suppressor protein SuhB [Pseudomonas aeruginosa PAO1]
                           271
                           99.99
                           99.99
                           0
                           1393.0
     

     
     
135085
                           gb|AAO54940.1|
                           (AE016860) inositol-1-monophosphatase [Pseudomonas syringae pv. tomato str. DC3000]
                           271
                           87.08
                           93.35
                           0
                           1245.0
     

     
     
135087
                           gb|AAM75410.1|
                           (AY115588) extragenic suppressor protein SuhB [Pseudomonas putida]
                           272
                           82.35
                           90.07
                           1
                           1166.0
     

     
     
135086
                           gb|AAN66463.1|AE016275_8
                           (AE016777) extragenic suppressor protein SuhB [Pseudomonas putida KT2440]
                           272
                           81.98
                           90.07
                           1
                           1167.0
     

     






      

          
GC ORFID: 45900How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3818Glimmer Score: 

          
Start: 3701948Stop: 3702763

          
Length: 816


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3818 translation of PA3818Homolog Bit Score 541.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4865 (ORF: BLASTX 486.0), t_PA3818 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCCTATGCTGAATATCGCCCTGCGCGCCGCTCGCAGCGCCGGTGAACTGATTTTCCGCTCCATCGAA 
CGCCTGGATGTCATCTCGGTCAACGAGAAGGATGCCAAGGACTACGTGACCGAAGTCGATCGCGCCGCCGAG 
CAGACCATCGTCGCCGCGCTGCGCAAGGCCTATCCGACTCACGCGATCATGGGCGAGGAAGGCGGCTTCATC 
GAAGGCAGCGGCGAGGGTGCCGATTACCTCTGGGTGATCGATCCGCTGGACGGCACCACCAACTTCATCCAT 
GGCGTACCGCACTTTGCCGTGAGCATCGCCTGCAAGTACAAGGGCCGCCTGGAGCACGCCGTGGTCCTCGAC 
CCGGTGCGCCAGGAAGAATTCACCGCCAGCCGCGGCCGCGGCGCCGCCCTCAACGGTCGCCGCCTGCGCGTC 
AGCGGCCGCAAGAGCCTGGAAGGCGCCCTGCTCGGCACCGGGTTCCCGTTCCGCGACAACCAGATCGACAAT 
CTCGACAACTACCTGAACATGTTCCGCAGCCTGGTCGGCCAGACCGCCGGCATCCGCCGCGCCGGCGCCGCC 
AGCCTGGACCTGGCCTACGTCGCCGCCGGACGCTACGACGCCTTCTGGGAATTCGGCCTGTCCGAATGGGAC 
ATGGCGGCAGGCGCCCTGCTGGTACAGGAAGCCGGCGGCCTGGTGAGCGACTTCACCGGCAGCCACGAATTC 
CTCGAGAAGGGTCACATCGTCGCCGGCAACACCAAATGCTTCAAGGCACTGCTGACCACCATCCAGCCGCAC 
CTGCCGCCGTCGCTGAAGCGCTGA