ViewGene
Locus Name:
GeneID:
Location:

GeneID:2897
TrivialName: PA14_14480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14480
PAO1 Ortholog Locus:PA3830
Sequence Length:813
Protein Length:270
Start: 1237183
Stop: 1237995
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07217.1|AE004800_6 (AE004800) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 269/270 (99%), Positives = 270/270 (100%)
Sequence:
GTGCCCGCCAGCAAACCTGTCGCGGATCCCGCCCGGAGTACCGACCCACGCGATTACCAGCGAGTCGGCCGG
CCGCTCGGGGTCATGGCCAAGACCTTCCCGGCGGGTTTCGTGGTCGCCGAGCATCGGCACGAGCGGGCGCAG
TTGATCCATGCCCTGTCGGGCGTGATCGAACTGCATGTCGGTCGCACGCTATGGCTGGTCCCGCCGCAGCGC
GCGGTATGGATGCCGGCGGGGATGGCGCACGCGATGCTGGCGCGCGGCGAGGTCCGCTTGCACACAGTCTAT
GTCCGGCCGCAGTCCTGCCCGCCGGAATTCCCCCGGGTGCCGCGCGGAGTGATGGTCAGCCCATTGTTGCGC
GAGTTGATCGTGCGCGCCGCCGGCCTGCCGTTGTTGTACGACGAGCGCGGCCGGGAGGGGCGGTTGATGGCG
GTGCTGCTGGACGAACTGGAGTGGTCGCGGGAACAGCCCCTGGCCTTGCCCGACCCCGCGGACCGACGCCTG
GGAAGAATCTGCCAGGCGCTGCTGGAGAACCCGGCCGACCCTCGCGGGCTGGAGGAGTGGGCGCGCTACGTG
GGGGCGTCCTCGCGGACCCTGGCACGGCTGTTTCTCTCCGAGCTGGGAGTGACCTTCGTCCATTGGCGCCAC
CAGGTGCGCCTAGCCGCCGCCCTGCCACGCCTGGCGGCTGGCGAAGCGGTGGCGCGGATCGCCGTGGATCTC
GGCTACCAGACGCCCAGCGCATTCAGTGCCATGTTCCGACGCCTGACCGGGAGCACGCCGAGCCGCTACTTC
GCCTTGTCCGATTCGGCGTAG
Translation:
MPASKPVADPARSTDPRDYQRVGRPLGVMAKTFPAGFVVAEHRHERAQLIHALSGVIELHVGRTLWLVPPQR
AVWMPAGMAHAMLARGEVRLHTVYVRPQSCPPEFPRVPRGVMVSPLLRELIVRAAGLPLLYDERGREGRLMA
VLLDELEWSREQPLALPDPADRRLGRICQALLENPADPRGLEEWARYVGASSRTLARLFLSELGVTFVHWRH
QVRLAAALPRLAAGEAVARIAVDLGYQTPSAFSAMFRRLTGSTPSRYFALSDSA*
AnnotationID:2905GeneID:2897
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 21:09:11
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA3830
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207,smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE40667.1| (BX640411) probable transcriptional regulator [Bordetella
           pertussis]
          Length = 269

 Score =  208 bits (530), Expect = 2e-53
 Identities = 109/264 (41%), Positives = 157/264 (59%), Gaps = 3/264 (1%)

>gb|AAN67978.1|AE016430_2 (AE016782) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 257

 Score =  190 bits (483), Expect = 7e-48
 Identities = 96/239 (40%), Positives = 141/239 (58%), Gaps = 1/239 (0%)






 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
CD-Length = 127 residues,  87.4% aligned
Score = 88.8 bits (219), Expect = 1e-18
Identities = 47/111 (42%), Positives = 63/111 (56%), Gaps = 1/111 (0%)

smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  98.8% aligned
Score = 74.1 bits (182), Expect = 4e-14
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14693




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22939




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31727




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2897_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2897
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4692
                           PA3830_tr
                           translation of PA3830
                           270
                           99.62
                           99.99
                           0
                           1395.0
     

     
     
135063
                           gb|AAG07217.1|AE004800_6
                           (AE004800) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           270
                           99.25
                           99.99
                           0
                           1392.0
     

     
     
4693
                           PA1235_tr
                           translation of PA1235
                           280
                           40.71
                           55.71
                           30
                           504.0
     

     
     
135066
                           gb|AAG04624.1|AE004553_1
                           (AE004553) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           280
                           40.71
                           55.71
                           30
                           504.0
     

     
     
135074
                           gb|AAG04988.1|AE004588_1
                           (AE004588) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           279
                           40.14
                           52.68
                           28
                           454.0
     

     






      

          
GC ORFID: 45899How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3830Glimmer Score: 

          
Start: 3716755Stop: 3715943

          
Length: 813


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3830 translation of PA3830Homolog Bit Score 541.0

          
Other Homologs:  t_PA1235 (ORF: BLASTX 202.0), t_PA3927 (ORF: BLASTX 182.0), t_PA1599 (ORF: BLASTX 178.0), t_PA0864 (ORF: BLASTX 165.0), t_PA3830 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCCGCCAGCAAACCTGTCGCGGATCCCGCCCGGAGTACCGACCCACGCGATTACCAGCGAGTCGGCCGG 
CCGCTCGGGGTCATGGCCAAGACCTTCCCGGCGGGTTTCGTGGTCGCCGAGCATCGGCACGAGCGGGCGCAG 
TTGATCCATGCCCTGTCGGGCGTGATCGAACTGCATGTCGGTCGCACGCTATGGCTGGTCCCGCCGCAGCGC 
GCGGTATGGATGCCGGCGGGGATGGCGCACGCGATGCTGGCGCGCGGCGAGGTCCGCTTGCACACAGTCTAT 
GTCCGGCCGCAGTCCTGCCCGCCGGAATTCCCCCGGGTGCCGCGCGGAGTGATGGTCAGCCCATTGTTGCGC 
GAGTTGATCGTGCGCGCCGCCGGCCTGCCGTTGTTGTACGACGAGCGCGGCCGGGAGGGGCGGTTGATGGCG 
GTGCTGCTGGACGAACTGGAGTGGTCGCGGGAACAGCCCCTGGCCTTGCCCGACCCCGCGGACCGACGCCTG 
GGAAGAATCTGCCAGGCGCTGCTGGAGAACCCGGCCGACCCTCGCGGGCTGGAGGAGTGGGCGCGCTACGTG 
GGGGCGTCCTCGCGGACCCTGGCACGGCTGTTTCTCTCCGAGCTGGGAGTGACCTTCGTCCATTGGCGCCAC 
CAGGTGCGCCTAGCCGCCGCCCTGCCACGCCTGGCGGCTGGCGAAGCGGTGGCGCGGATCGCCGTGGATCTC 
GGCTACCAGACGCCCAGCGCATTCAGTGCCATGTTCCGACGCCTGACCGGGAGCACGCCGAGCCGCTACTTC 
GCCTTGTCCGATTCGGCGTAG