ViewGene
Locus Name:
GeneID:
Location:

GeneID:2893
TrivialName: PA14_53120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53120
PAO1 Ortholog Locus:PA0862
Sequence Length:783
Protein Length:260
Start: 4708956
Stop: 4708174
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04251.1|AE004521_2 (AE004521) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 259/260 (99%), Positives = 259/260 (99%)
Sequence:
GTGAGCGAGTTCTTTGACCGTACGGGCCCCTTGCAGGAGGCGGGAAGCTATCCGCAGTGGGCGCAGCAACTG
ATCGTCGACTGCCAGGCGAGCAAGGACCGGGTTTCCGGCCACGAGCTGTACCGGCGCATGCGCGACGCCGAG
CTGAGCCCGGCGCTGATGCGCCTGTACCTGATCGGCGGCTGGCCGGTGGTCGAGCAGTTCCCCTTGTACATG
TCGCAGAACCTGCTGAAGACCCGTTTCGCCCGCCATCCCGGCGAAGACATGGCGCGCCGCTGGCTGATGCGC
AATATTCGGGTCGAACTCAACCACGCCGACTACTGGCTGCACTGGGCCGAGGCCCACGGCGTGAGCCTGGCC
GAGATCCAGGCGCAAGACGTGCCGGCCGAACTGCACGCGCTCAGCCACTGGTGCTGGCACACCTGCGCCAGC
GACTCACTGCCGGTGGCCATGGCCGCCACCAACTACGCCATCGAAGGCGTCACTGGCGAGTGGTCGGCGCTG
GTCTGTTCGAACGGCGTCTACGAAAACGCCTTCCCCAAGGAAGGCCGCAAGCGCGCCATGAAGTGGCTCAAG
CTCCACGCCCAGTACGACGATGCCCACCCCTGGGAGGCGCTGGAGATCATCTGCACCCTGGCCGGCACCAAT
CCCAGCGCCGAGCTGCGCCGGCAACTGCGCGACGCGATCTGCAAGAGCTACGACTACATGTACCTGTTCCTC
GAGCGCTGCATGCAACTGGAGGAGGCGCGCAGCGCCCGCAAGCTCGCGGTCGGCGCGGAGTAG
Translation:
MSEFFDRTGPLQEAGSYPQWAQQLIVDCQASKDRVSGHELYRRMRDAELSPALMRLYLIGGWPVVEQFPLYM
SQNLLKTRFARHPGEDMARRWLMRNIRVELNHADYWLHWAEAHGVSLAEIQAQDVPAELHALSHWCWHTCAS
DSLPVAMAATNYAIEGVTGEWSALVCSNGVYENAFPKEGRKRAMKWLKLHAQYDDAHPWEALEIICTLAGTN
PSAELRRQLRDAICKSYDYMYLFLERCMQLEEARSARKLAVGAE*
AnnotationID:2901GeneID:2893
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 10:10:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0862
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5424
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
      CD-Length = 242 residues, 100.0% aligned
      Score =  259 bits (662), Expect = 7e-70






   
Genomic Context:






   
Comment:


















    ReferenceID:14691




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22931




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2893
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4688
                           PA0862_tr
                           translation of PA0862
                           260
                           99.61
                           99.61
                           0
                           1396.0
     

     
     
134830
                           gb|AAG04251.1|AE004521_2
                           (AE004521) hypothetical protein PA0862 [Pseudomonas aeruginosa PAO1]
                           260
                           99.23
                           99.61
                           0
                           1393.0
     

     
     
134831
                           gb|AAO55258.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           261
                           69.34
                           80.84
                           1
                           1007.0
     

     
     
134832
                           gb|AAN67382.1|AE016364_7
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           263
                           67.30
                           78.32
                           5
                           979.0
     

     






      

          
GC ORFID: 45895How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0862Glimmer Score: 

          
Start: 244951Stop: 245733

          
Length: 783


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0862 translation of PA0862Homolog Bit Score 542.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7725 (ORF: BLASTX 398.0), t_PA0862 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGAGTTCTTTGACCGTACGGGCCCCTTGCAGGAGGCGGGAAGCTATCCGCAGTGGGCGCAGCAACTG 
ATCGTCGACTGCCAGGCGAGCAAGGACCGGGTTTCCGGCCACGAGCTGTACCGGCGCATGCGCGACGCCGAG 
CTGAGCCCGGCGCTGATGCGCCTGTACCTGATCGGCGGCTGGCCGGTGGTCGAGCAGTTCCCCTTGTACATG 
TCGCAGAACCTGCTGAAGACCCGTTTCGCCCGCCATCCCGGCGAAGACATGGCGCGCCGCTGGCTGATGCGC 
AATATTCGGGTCGAACTCAACCACGCCGACTACTGGCTGCACTGGGCCGAGGCCCACGGCGTGAGCCTGGCC 
GAGATCCAGGCGCAAGACGTGCCGGCCGAACTGCACGCGCTCAGCCACTGGTGCTGGCACACCTGCGCCAGC 
GACTCACTGCCGGTGGCCATGGCCGCCACCAACTACGCCATCGAAGGCGTCACTGGCGAGTGGTCGGCGCTG 
GTCTGTTCGAACGGCGTCTACGAAAACGCCTTCCCCAAGGAAGGCCGCAAGCGCGCCATGAAGTGGCTCAAG 
CTCCACGCCCAGTACGACGATGCCCACCCCTGGGAGGCGCTGGAGATCATCTGCACCCTGGCCGGCACCAAT 
CCCAGCGCCGAGCTGCGCCGGCAACTGCGCGACGCGATCTGCAAGAGCTACGACTACATGTACCTGTTCCTC 
GAGCGCTGCATGCAACTGGAGGAGGCGCGCAGCGCCCGCAAGCTCGCGGTCGGCGCGGAGTAG