ViewGene
Locus Name:
GeneID:
Location:

GeneID:2892
TrivialName: PA14_54490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54490
PAO1 Ortholog Locus:PA0758
Sequence Length:837
Protein Length:278
Start: 4830655
Stop: 4831491
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04147.1|AE004510_11 (AE004510) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 277/278 (99%), Positives = 277/278 (99%)
Sequence:
ATGAGCAAGCTTGCCGACAAAGTCCAACAGGACCTGATCCGCGCCATCGATCAGGATGAACTGGTGCTGCCG
ACCCTGCCCGAGGTGGCCCTGCAGGTCCGCGAGGCGGCGGAGGACCCGGATGTCAGCATCCAGGCCCTGAGC
AAGGTGATCGGCAACGACGCGGCGCTGACCGCGCGCATCATCCGCGTGGTGAACAGTCCGCTGCTGCGCAGC
CCGAAGGAAATCACCGACCTGCAGATGGCGATCAGCCGGCTGGGCATCAACTACACCTGCAACCTGGCCACC
GGCCTGGCCATGGAGCAGATGTTCCAGGCCACCACCGACGTGGTCGACCGCAAGATGCGCGAAGTCTGGAAC
AAGAGCACCGAGATCGCCGGCATCTGCCACGTGCTGGCCCGTCACTACACCCGCCTGGCGCCGGACCAGGCG
ACCCTGGCCGGGCTGGTGCACCAGATCGGCGTGCTGCCGATCCTCACCTACGCCGAGGATCACAACGAGCTG
CTGTCGGACTCCATCAGCCTGAGCCACGTGATCGAGCGCATCCATCCGCTGATCGGCGAGCGCATCCTCAAA
GCCTGGGATTTCCCCGCGCCGATCGCCGAGGTCCCGCGCCAGCACCTGGACTTCACCCGCAACTCGCCGCGC
GCCGACTATACCGACCTGGTCCAGGTCGCCACCCTGCAGAGCTACCTTGGCAGCGAGCATCCCTATACCCGC
CTGGACTGGAGCCAGATCCCGGCGTTCGCCAAGCTCGGCCTCGAACCGACCGTCGACATGAAGGAAGACGAG
GACCTCTCCAGCGCCCTGGAAGCCGCCACCAGCATGCTGCAATAG
Translation:
MSKLADKVQQDLIRAIDQDELVLPTLPEVALQVREAAEDPDVSIQALSKVIGNDAALTARIIRVVNSPLLRS
PKEITDLQMAISRLGINYTCNLATGLAMEQMFQATTDVVDRKMREVWNKSTEIAGICHVLARHYTRLAPDQA
TLAGLVHQIGVLPILTYAEDHNELLSDSISLSHVIERIHPLIGERILKAWDFPAPIAEVPRQHLDFTRNSPR
ADYTDLVQVATLQSYLGSEHPYTRLDWSQIPAFAKLGLEPTVDMKEDEDLSSALEAATSMLQ*
AnnotationID:2900GeneID:2892
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 13:01:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0758
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1639
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
COG1639, Predicted signal transduction protein [Signal transduction mechanisms]
       CD-Length = 289 residues, 100.0% aligned
       Score =  257 bits (657), Expect = 3e-69






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5787




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22929




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2892
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4687
                           PA0758_tr
                           translation of PA0758
                           278
                           99.64
                           99.64
                           0
                           1397.0
     

     
     
134827
                           gb|AAG04147.1|AE004510_11
                           (AE004510) hypothetical protein PA0758 [Pseudomonas aeruginosa PAO1]
                           278
                           99.64
                           99.64
                           0
                           1397.0
     

     
     
134828
                           gb|AAO57685.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           278
                           55.75
                           77.33
                           5
                           812.0
     

     
     
134829
                           gb|AAN67044.1|AE016333_5
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           280
                           52.85
                           71.42
                           12
                           744.0
     

     






      

          
GC ORFID: 45894How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0758Glimmer Score: 

          
Start: 123252Stop: 122416

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0758 translation of PA0758Homolog Bit Score 542.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2597 (ORF: BLASTX 324.0), t_PA0758 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAGCTTGCCGACAAAGTCCAACAGGACCTGATCCGCGCCATCGATCAGGATGAACTGGTGCTGCCG 
ACCCTGCCCGAGGTGGCCCTGCAGGTCCGCGAGGCGGCGGAGGACCCGGATGTCAGCATCCAGGCCCTGAGC 
AAGGTGATCGGCAACGACGCGGCGCTGACCGCGCGCATCATCCGCGTGGTGAACAGTCCGCTGCTGCGCAGC 
CCGAAGGAAATCACCGACCTGCAGATGGCGATCAGCCGGCTGGGCATCAACTACACCTGCAACCTGGCCACC 
GGCCTGGCCATGGAGCAGATGTTCCAGGCCACCACCGACGTGGTCGACCGCAAGATGCGCGAAGTCTGGAAC 
AAGAGCACCGAGATCGCCGGCATCTGCCACGTGCTGGCCCGTCACTACACCCGCCTGGCGCCGGACCAGGCG 
ACCCTGGCCGGGCTGGTGCACCAGATCGGCGTGCTGCCGATCCTCACCTACGCCGAGGATCACAACGAGCTG 
CTGTCGGACTCCATCAGCCTGAGCCACGTGATCGAGCGCATCCATCCGCTGATCGGCGAGCGCATCCTCAAA 
GCCTGGGATTTCCCCGCGCCGATCGCCGAGGTCCCGCGCCAGCACCTGGACTTCACCCGCAACTCGCCGCGC 
GCCGACTATACCGACCTGGTCCAGGTCGCCACCCTGCAGAGCTACCTTGGCAGCGAGCATCCCTATACCCGC 
CTGGACTGGAGCCAGATCCCGGCGTTCGCCAAGCTCGGCCTCGAACCGACCGTCGACATGAAGGAAGACGAG 
GACCTCTCCAGCGCCCTGGAAGCCGCCACCAGCATGCTGCAATAG