ViewGene

Locus Name:
GeneID:
Location:

GeneID:2890
TrivialName: PA14_56540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56540
PAO1 Ortholog Locus:PA4348
Sequence Length:786
Protein Length:261
Start: 5041156
Stop: 5040371
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07736.1|AE004851_4 (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 261/261 (100%), Positives = 261/261 (100%)
Sequence:
ATGCGACGCGAACCGATCGTGCTGTTCGACAACGGCAGCCACCAGTGCCTGTGTTTCGATGACCTCGTCAGC
GGCGAAGGGGTCCAGTCCAACCAGTTCCTGATCGTCGACAACGGCCAGTACCTGCTGCTCGATCCCGGCGGC
GACCTGACCTACACGCCGCTCTCGCTGGAATTGTCGAAACGCTTTCCGCTGCAGGAGCTGGACTACATCTTC
GCTTCGCACCAGGACCCGGACATCATCGCCGCCCTCGACAAGTGGCTGCTGCACACCCGCGCCCGGGTGATC
TGCTCCAAGCTGTGGGCGCGCTTCCTGCCGCACCTGACGGCCAACTACCTGGCGGTCAGCCATGGCATCAAC
ACCTACGACCGGGTCATGCCGTTGCCCGACCGCGGCCAGGCGATCGCTCTCGGCGACTGCTCGTTGAAGGCG
ATCCCCGCGCATTTCCTGCATTCGGTGGGCAACTTCCAGCTCTACGACCCGGTGAGCAAGATCCTTTTCTCG
GGCGACATGGGCGCCTCGCTGGTGGACGACGCCGCGCCGGTCAGCGATTTCGCCGCGCATATCCAGTACATG
GACGGATTCCATCGCCGCTACATGGCGGCGAACAAGATCTGCCGCCTGTGGGCGCGGATGGTCCGGGACATG
GATGTGGAGATGATCGTGCCGCAACACGGGCGGCCCTTCGTCGGCAAGGAAATGATCAGCGCCTTCCTCTAC
TGGATCGAGAACCTCGAGTGCGGCATCGACCTGCTCGGTCCGGACGACTACCGCATGCCCGGCTGA
Translation:
MRREPIVLFDNGSHQCLCFDDLVSGEGVQSNQFLIVDNGQYLLLDPGGDLTYTPLSLELSKRFPLQELDYIF
ASHQDPDIIAALDKWLLHTRARVICSKLWARFLPHLTANYLAVSHGINTYDRVMPLPDRGQAIALGDCSLKA
IPAHFLHSVGNFQLYDPVSKILFSGDMGASLVDDAAPVSDFAAHIQYMDGFHRRYMAANKICRLWARMVRDM
DVEMIVPQHGRPFVGKEMISAFLYWIENLECGIDLLGPDDYRMPG*
AnnotationID:2898GeneID:2890
AnnotatorUID: diggins
Modification Date/Time: 2005-05-01 08:08:31
Gene Name:
Confidence Code:3
GeneProduct:putative flavoprotein
Cell Localization:()
Synonyms:PA4348
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0426
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAB50663.1| (AJ248288) Flavodoxin, putative [Pyrococcus abyssi]
          Length = 259

 Score =  181 bits (459), Expect = 4e-45
 Identities = 97/247 (39%), Positives = 138/247 (55%), Gaps = 10/247 (4%)
Structural Features:
COG0426, FpaA, Uncharacterized flavoproteins 
[Energy production and conversion]
CD-Length = 388 residues, only  66.2% aligned
Score =  231 bits (590), Expect = 2e-61
Identities = 78/269 (28%), Positives = 113/269 (42%), Gaps = 20/269 (7%)
Genomic Context:
Comment:
ReferenceID:5783
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17100
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2890_cdd.html
URL:
ReferenceID:22925
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2890

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4685 PA4348_tr translation of PA4348 261 99.99 99.99 0 1398.0
134817 gb|AAG07736.1|AE004851_4 (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 261 99.99 99.99 0 1398.0
134819 gb|AAC07081.1| (AE000717) hypothetical protein [Aquifex aeolicus VF5] 263 48.28 66.92 14 707.0
134818 emb|CAD15919.1| (AL646068) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 286 46.50 62.23 32 714.0
134820 gb|AAD35107.1|AE001690_1 (AE001690) conserved hypothetical protein [Thermotoga maritima] 269 40.52 58.73 24 515.0
GC ORFID: 45892How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4348Glimmer Score:
Start: 4304832Stop: 4304047
Length: 786
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4348 translation of PA4348Homolog Bit Score 543.0
Other Homologs: t_PA4348 (ORF: GLIMMER)
GC ORF Sequence
ATGCGACGCGAACCGATCGTGCTGTTCGACAACGGCAGCCACCAGTGCCTGTGTTTCGATGACCTCGTCAGC
GGCGAAGGGGTCCAGTCCAACCAGTTCCTGATCGTCGACAACGGCCAGTACCTGCTGCTCGATCCCGGCGGC
GACCTGACCTACACGCCGCTCTCGCTGGAATTGTCGAAACGCTTTCCGCTGCAGGAGCTGGACTACATCTTC
GCTTCGCACCAGGACCCGGACATCATCGCCGCCCTCGACAAGTGGCTGCTGCACACCCGCGCCCGGGTGATC
TGCTCCAAGCTGTGGGCGCGCTTCCTGCCGCACCTGACGGCCAACTACCTGGCGGTCAGCCATGGCATCAAC
ACCTACGACCGGGTCATGCCGTTGCCCGACCGCGGCCAGGCGATCGCTCTCGGCGACTGCTCGTTGAAGGCG
ATCCCCGCGCATTTCCTGCATTCGGTGGGCAACTTCCAGCTCTACGACCCGGTGAGCAAGATCCTTTTCTCG
GGCGACATGGGCGCCTCGCTGGTGGACGACGCCGCGCCGGTCAGCGATTTCGCCGCGCATATCCAGTACATG
GACGGATTCCATCGCCGCTACATGGCGGCGAACAAGATCTGCCGCCTGTGGGCGCGGATGGTCCGGGACATG
GATGTGGAGATGATCGTGCCGCAACACGGGCGGCCCTTCGTCGGCAAGGAAATGATCAGCGCCTTCCTCTAC
TGGATCGAGAACCTCGAGTGCGGCATCGACCTGCTCGGTCCGGACGACTACCGCATGCCCGGCTGA