ViewGene
Locus Name:
GeneID:
Location:

GeneID:289
TrivialName: PA14_08120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08120
PAO1 Ortholog Locus:PA0625
Sequence Length:2238
Protein Length:745
Start: 696289
Stop: 698526
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04014.1|AE004498_9 (AE004498) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 728/745 (97%), Positives = 736/745 (98%)
Sequence:
ATGAGTAAAGACATGGACCTGGTGGTCTCCATCGGCGGCATCGCCGACCCCTCCTTGGGCAAGGCATTCGAG
ACCGTCAAGGCACGGCTCGACAGTCTCCAGGAACGTTCCCGCCAGGCGTCCAGCCTGAGAGATGTGCTGGGA
GACGCCATACGCCTGGAGCGAGAACTCGCCGATATGCGCAAGGTCGGGGACCGCGGCGTTGCTGAGCATGCC
CGGCAGCTTGGCGAACGCCAGGAGCAACTGAAGCGACTCGGCATCGAGGCCAGGGCCGCGGGCGATGCCTAC
GCTCGACTGGGCGAGATGCAGCGTGGCCTGGATATGCAGGTCCGCGGCCTGCAACGGCTGGAGCAGGCCAGC
CAGGCAATGCCATTGGCTAGCGCATTTTCCGGACTGGTCGTGGAAGCCAGCAAGACGGCTGCCGGTTATCAA
GCGCGGTTGCGCGACCTGGCGATCCGCAACGGCCTGGACGTCGGCCGGGAGCCAGCCTTGGCATCCCTGATC
CAGGACAGCGCCAGCCAGAGCGGCCTGGGACGCACGGCGACGCTGGACATGCTGGAGCACTTGAACGCCACC
GGCATGGGGTTCGCCGCCGCGCAAATGAATCTGGGACTGGCGGGCCGCTTCGGCTTTGGCCAAGGGATTGCT
TCAGCCGAGGTTGCGGGGCTGGTTCGAGCGTTGCAACTGGCCCAGGGTTCGGACTCGCCAGAGCAATTGTCC
GCCTCCCTCGACCGCCTGGTCGTCCTGGGTAAAGGCAGAGTCGGCAGTGAGGCCCTGGCGCGTCGCCTGCCT
GCCTTGTTGTCAGCGCTGGGCAATGCGGGAGAGGCCACGGCCGGCGATGTCGGTGCACTGGGGGCCTTGCTG
GAGATTCAAGCAAAGAACACCACGCCAGACAAAGCGGACGTGCGGATGAAGGCCTGGCTGGAGTTCGTCGGC
AGCGGCAGCTTGAAACGCGCTTATGGCCAGGACTACGACCGGGACCTGGAAGCGCTGCGCAAGGACGGAGCG
AGTCTGCTGGAGGCCAACCTGGAGCTGGCTGCGCGCTATCGGGATAAGGGCGGCAAGCTCAGCGCCGGCGTG
GCGTCGCCGGCGCTTGAAGCCTATCGAGCGTCGCGCGGCGAGTTCCAGGGCTTGCTCGAATCCCAGCAGTCT
TCCGCTGGCTCTTCGGAGCGCGATGCGCGGCGTCGCGAGGGGATGTCCCAGGAGCTGTGGAAGGCTTCCAGC
GACAGTTGGGAGAGGGCGCAGACCGCTTTGGGCAGCGCCCTGAATCCATATCTGGACAACCTGGCCAAGGGG
AGCGCGGTACTCGGCGAGTCGACTGCGGAGCTGCTCGAAGCCTATCCGCGGACGACGGCCGGTCTTACCGCC
GCCGCAGGTGCGGTGTTATCCGGGTATCTCGCCTACAAGGGAGGGCGCGGCGCTATCGACGTGCTGCGTGGC
GGTCGGCTCGGTCGGCGAGGGATCGCTGCCGTCGGCGACCTGATCGAACGGGGTGCAGGCCGGGTATCGGGT
GGTAGTGAAATACAACGCGTGTTCGTTACCAACTGGCCGGTGCCGGGAGGCGACTCTACGCTGGAGTCCGCG
AGGAGGCCGGCACAACGAAAGCGCGGTCAAACACCACGCAGGAAGAGAGGCAAGGGCGGTGGGGTGAAGGCC
CGCTCCCTTCCATCCCTTGGCTTCTCGGCCGGAGGAGGCTTGGGGGCGATGGCAGGAAAGCTGCCGCGCCTG
TCGCGTTTGCCCATACGCAACGCGCCGCTGCAAGTGGCCTCGTCGTTGATCGATGTTGCTGAGGTCTACTCC
AGCGACCTGTCGGAGAGCGAAAAGACCATCGTCTATGGCGAGGCCGGTGGCTCCCTGGCTGGTTCCCTGGCT
GGCGCCGCTCTGGGAGCGAGCATCGGCTCGGTGGTGCCGGTGGTCGGTACGCTGATCGGTGGATTGGTTGGC
GGCGCTATCGGCGCCTGGGGCGGTAGCGAACTGGGGGGGCGTCTGGGACGCAGTCTGGCTGGCGATCCGCCG
GCGGACTCGGACAACAAGCCGACGGTGCCCGCACCACAGGCCGAGCCCGTCGCGGCTGCGCCCAACTGGACC
TTCGCGCCGCAGATCAACCTGACGGTGCAAGGCAACGTACACGAGCCGCAGCGCCTGGCCGACGAGTTGCTG
CCCTACCTGCAACGCATGCTTGTCGACTTCGCCGACGAGCGGCAGCGGCGCAGCCTCTACGATCCGGCGATG
GTCTAA
Translation:
MSKDMDLVVSIGGIADPSLGKAFETVKARLDSLQERSRQASSLRDVLGDAIRLERELADMRKVGDRGVAEHA
RQLGERQEQLKRLGIEARAAGDAYARLGEMQRGLDMQVRGLQRLEQASQAMPLASAFSGLVVEASKTAAGYQ
ARLRDLAIRNGLDVGREPALASLIQDSASQSGLGRTATLDMLEHLNATGMGFAAAQMNLGLAGRFGFGQGIA
SAEVAGLVRALQLAQGSDSPEQLSASLDRLVVLGKGRVGSEALARRLPALLSALGNAGEATAGDVGALGALL
EIQAKNTTPDKADVRMKAWLEFVGSGSLKRAYGQDYDRDLEALRKDGASLLEANLELAARYRDKGGKLSAGV
ASPALEAYRASRGEFQGLLESQQSSAGSSERDARRREGMSQELWKASSDSWERAQTALGSALNPYLDNLAKG
SAVLGESTAELLEAYPRTTAGLTAAAGAVLSGYLAYKGGRGAIDVLRGGRLGRRGIAAVGDLIERGAGRVSG
GSEIQRVFVTNWPVPGGDSTLESARRPAQRKRGQTPRRKRGKGGGVKARSLPSLGFSAGGGLGAMAGKLPRL
SRLPIRNAPLQVASSLIDVAEVYSSDLSESEKTIVYGEAGGSLAGSLAGAALGASIGSVVPVVGTLIGGLVG
GAIGAWGGSELGGRLGRSLAGDPPADSDNKPTVPAPQAEPVAAAPNWTFAPQINLTVQGNVHEPQRLADELL
PYLQRMLVDFADERQRRSLYDPAMV*
AnnotationID:299GeneID:289
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:46
Gene Name:
Confidence Code:3
GeneProduct:putative tail length determinator protein
Cell Localization:()
Synonyms:PA0625
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3941
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3941, Mu-like prophage protein
CD-Length = 633 residues, 100.0% aligned
Score =  506 bits (1304), Expect = 4e-144
Identities = 385/698 (55%), Positives = 426/698 (61%), Gaps = 67/698 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:581




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17723




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33891




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:289_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:289
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
475
                           PA0625_tr
                           translation of PA0625
                           745
                           97.71
                           98.79
                           0
                           3617.0
     

     
     
24748
                           gb|AAG04014.1|AE004498_9
                           (AE004498) hypothetical protein PA0625 [Pseudomonas aeruginosa PAO1]
                           745
                           97.71
                           98.79
                           0
                           3617.0
     

     
     
24749
                           dbj|BAA83164.1|
                           (AB030825) PRF20~putative tail length determinator protein~similar to yqbO gene of B. subtilis [Pseudomonas aeruginosa]
                           745
                           97.71
                           98.79
                           0
                           3617.0
     

     






      

          
GC ORFID: 43291How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0625Glimmer Score: 

          
Start: 6497632Stop: 6499869

          
Length: 2238


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0625 translation of PA0625Homolog Bit Score 1397.0

          
Other Homologs:  t_PA0625 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTAAAGACATGGACCTGGTGGTCTCCATCGGCGGCATCGCCGACCCCTCCTTGGGCAAGGCATTCGAG 
ACCGTCAAGGCACGGCTCGACAGTCTCCAGGAACGTTCCCGCCAGGCGTCCAGCCTGAGAGATGTGCTGGGA 
GACGCCATACGCCTGGAGCGAGAACTCGCCGATATGCGCAAGGTCGGGGACCGCGGCGTTGCTGAGCATGCC 
CGGCAGCTTGGCGAACGCCAGGAGCAACTGAAGCGACTCGGCATCGAGGCCAGGGCCGCGGGCGATGCCTAC 
GCTCGACTGGGCGAGATGCAGCGTGGCCTGGATATGCAGGTCCGCGGCCTGCAACGGCTGGAGCAGGCCAGC 
CAGGCAATGCCATTGGCTAGCGCATTTTCCGGACTGGTCGTGGAAGCCAGCAAGACGGCTGCCGGTTATCAA 
GCGCGGTTGCGCGACCTGGCGATCCGCAACGGCCTGGACGTCGGCCGGGAGCCAGCCTTGGCATCCCTGATC 
CAGGACAGCGCCAGCCAGAGCGGCCTGGGACGCACGGCGACGCTGGACATGCTGGAGCACTTGAACGCCACC 
GGCATGGGGTTCGCCGCCGCGCAAATGAATCTGGGACTGGCGGGCCGCTTCGGCTTTGGCCAAGGGATTGCT 
TCAGCCGAGGTTGCGGGGCTGGTTCGAGCGTTGCAACTGGCCCAGGGTTCGGACTCGCCAGAGCAATTGTCC 
GCCTCCCTCGACCGCCTGGTCGTCCTGGGTAAAGGCAGAGTCGGCAGTGAGGCCCTGGCGCGTCGCCTGCCT 
GCCTTGTTGTCAGCGCTGGGCAATGCGGGAGAGGCCACGGCCGGCGATGTCGGTGCACTGGGGGCCTTGCTG 
GAGATTCAAGCAAAGAACACCACGCCAGACAAAGCGGACGTGCGGATGAAGGCCTGGCTGGAGTTCGTCGGC 
AGCGGCAGCTTGAAACGCGCTTATGGCCAGGACTACGACCGGGACCTGGAAGCGCTGCGCAAGGACGGAGCG 
AGTCTGCTGGAGGCCAACCTGGAGCTGGCTGCGCGCTATCGGGATAAGGGCGGCAAGCTCAGCGCCGGCGTG 
GCGTCGCCGGCGCTTGAAGCCTATCGAGCGTCGCGCGGCGAGTTCCAGGGCTTGCTCGAATCCCAGCAGTCT 
TCCGCTGGCTCTTCGGAGCGCGATGCGCGGCGTCGCGAGGGGATGTCCCAGGAGCTGTGGAAGGCTTCCAGC 
GACAGTTGGGAGAGGGCGCAGACCGCTTTGGGCAGCGCCCTGAATCCATATCTGGACAACCTGGCCAAGGGG 
AGCGCGGTACTCGGCGAGTCGACTGCGGAGCTGCTCGAAGCCTATCCGCGGACGACGGCCGGTCTTACCGCC 
GCCGCAGGTGCGGTGTTATCCGGGTATCTCGCCTACAAGGGAGGGCGCGGCGCTATCGACGTGCTGCGTGGC 
GGTCGGCTCGGTCGGCGAGGGATCGCTGCCGTCGGCGACCTGATCGAACGGGGTGCAGGCCGGGTATCGGGT 
GGTAGTGAAATACAACGCGTGTTCGTTACCAACTGGCCGGTGCCGGGAGGCGACTCTACGCTGGAGTCCGCG 
AGGAGGCCGGCACAACGAAAGCGCGGTCAAACACCACGCAGGAAGAGAGGCAAGGGCGGTGGGGTGAAGGCC 
CGCTCCCTTCCATCCCTTGGCTTCTCGGCCGGAGGAGGCTTGGGGGCGATGGCAGGAAAGCTGCCGCGCCTG 
TCGCGTTTGCCCATACGCAACGCGCCGCTGCAAGTGGCCTCGTCGTTGATCGATGTTGCTGAGGTCTACTCC 
AGCGACCTGTCGGAGAGCGAAAAGACCATCGTCTATGGCGAGGCCGGTGGCTCCCTGGCTGGTTCCCTGGCT 
GGCGCCGCTCTGGGAGCGAGCATCGGCTCGGTGGTGCCGGTGGTCGGTACGCTGATCGGTGGATTGGTTGGC 
GGCGCTATCGGCGCCTGGGGCGGTAGCGAACTGGGGGGGCGTCTGGGACGCAGTCTGGCTGGCGATCCGCCG 
GCGGACTCGGACAACAAGCCGACGGTGCCCGCACCACAGGCCGAGCCCGTCGCGGCTGCGCCCAACTGGACC 
TTCGCGCCGCAGATCAACCTGACGGTGCAAGGCAACGTACACGAGCCGCAGCGCCTGGCCGACGAGTTGCTG 
CCCTACCTGCAACGCATGCTTGTCGACTTCGCCGACGAGCGGCAGCGGCGCAGCCTCTACGATCCGGCGATG 
GTCTAA