ViewGene
Locus Name:
GeneID:
Location:

GeneID:2889
TrivialName: PA14_16340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16340
PAO1 Ortholog Locus:PA3715
Sequence Length:804
Protein Length:267
Start: 1396898
Stop: 1396095
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07102.1|AE004790_7 (AE004790) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 265/267 (99%), Positives = 267/267 (100%)
Sequence:
ATGGACCGTAACCGCCGCCTCTCCGCCCGACTCTGCCTCCTGCTGCTGGGACTCGCCAGCCAGGCCGAAGCC
CGCGAACCGCAGCCCTGCGCGTCGCGACTGCTTGACGCCGTAGCCAGGCAGGTCGGCCACGATGGCTGGATA
GCCCCTTCGTACGAATCTTCCGGTCCGTTCCTCGCCGTGGCCTGCAAGCCCTGGCCGGACGACCCCGCGCAG
ACGGTGATCGCCATGGCCTACCTGGATCCGGGCGACACCGCCGTGGAAGGCGAACGCCACCCGCATCTGCTA
TTGGCCAAGGCCGACAGCCGCAGCGGCAGGCTGCTCGAACGCTACGACAGCGACTTCGAAGAAGACGCGTCC
GTCGCCGTCGGCAGCGACAGCCTCTGGCTGGACACCGCGCGCTATCGCCTGAGCCCGACGGTGCGCGCCTTC
GGCGTGGTATTCCATAGCGTGGCGCGTGGCGCCAGTTGTCCGGAAGCCGGCTTCGACAACCTGCTGACCCTG
GTGGTGCCGGCCGGCGACGGCAAGCTGCGGCCGGTGCTCAATACCTACCTGGATCAGTGGAGGACGCTGAAA
GGCTCGGTCTGCTCCGCCGAGCCCGGGTTCGAACAGGAAGTCTCGCACCTGACCCTGGAACTCGGCCGCGGA
CGCTCCAACGGCTTTGCCGACCTGGTCGTCACCTCGCGGGTCAGCGACGGCGAAACGGAGAACGGCAAACCC
TTGCGCACGGTGAAGCGCACGCTGCGCTACGACGGCGAGCGCTACCCGTTCGAGGAGTATTCGGACTTCTGG
CACCGCCAGTGA
Translation:
MDRNRRLSARLCLLLLGLASQAEAREPQPCASRLLDAVARQVGHDGWIAPSYESSGPFLAVACKPWPDDPAQ
TVIAMAYLDPGDTAVEGERHPHLLLAKADSRSGRLLERYDSDFEEDASVAVGSDSLWLDTARYRLSPTVRAF
GVVFHSVARGASCPEAGFDNLLTLVVPAGDGKLRPVLNTYLDQWRTLKGSVCSAEPGFEQEVSHLTLELGRG
RSNGFADLVVTSRVSDGETENGKPLRTVKRTLRYDGERYPFEEYSDFWHRQ*
AnnotationID:2897GeneID:2889
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 07:07:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3715
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:5781




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22923




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2889
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4684
                           PA3715_tr
                           translation of PA3715
                           267
                           99.25
                           99.99
                           0
                           1399.0
     

     
     
134816
                           gb|AAG07102.1|AE004790_7
                           (AE004790) hypothetical protein PA3715 [Pseudomonas aeruginosa PAO1]
                           267
                           99.25
                           99.99
                           0
                           1399.0
     

     






      

          
GC ORFID: 45891How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3715Glimmer Score: 

          
Start: 3557039Stop: 3557842

          
Length: 804


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3715 translation of PA3715Homolog Bit Score 543.0

          
Other Homologs:  t_PA3715 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACCGTAACCGCCGCCTCTCCGCCCGACTCTGCCTCCTGCTGCTGGGACTCGCCAGCCAGGCCGAAGCC 
CGCGAACCGCAGCCCTGCGCGTCGCGACTGCTTGACGCCGTAGCCAGGCAGGTCGGCCACGATGGCTGGATA 
GCCCCTTCGTACGAATCTTCCGGTCCGTTCCTCGCCGTGGCCTGCAAGCCCTGGCCGGACGACCCCGCGCAG 
ACGGTGATCGCCATGGCCTACCTGGATCCGGGCGACACCGCCGTGGAAGGCGAACGCCACCCGCATCTGCTA 
TTGGCCAAGGCCGACAGCCGCAGCGGCAGGCTGCTCGAACGCTACGACAGCGACTTCGAAGAAGACGCGTCC 
GTCGCCGTCGGCAGCGACAGCCTCTGGCTGGACACCGCGCGCTATCGCCTGAGCCCGACGGTGCGCGCCTTC 
GGCGTGGTATTCCATAGCGTGGCGCGTGGCGCCAGTTGTCCGGAAGCCGGCTTCGACAACCTGCTGACCCTG 
GTGGTGCCGGCCGGCGACGGCAAGCTGCGGCCGGTGCTCAATACCTACCTGGATCAGTGGAGGACGCTGAAA 
GGCTCGGTCTGCTCCGCCGAGCCCGGGTTCGAACAGGAAGTCTCGCACCTGACCCTGGAACTCGGCCGCGGA 
CGCTCCAACGGCTTTGCCGACCTGGTCGTCACCTCGCGGGTCAGCGACGGCGAAACGGAGAACGGCAAACCC 
TTGCGCACGGTGAAGCGCACGCTGCGCTACGACGGCGAGCGCTACCCGTTCGAGGAGTATTCGGACTTCTGG 
CACCGCCAGTGA