ViewGene
Locus Name:
GeneID:
Location:

GeneID:2888
TrivialName: PA14_17730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17730
PAO1 Ortholog Locus:PA3598
Sequence Length:816
Protein Length:271
Start: 1523344
Stop: 1524159
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06986.1|AE004780_5 (AE004780) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 271/271 (100%), Positives = 271/271 (100%)
Sequence:
ATGAAAGTCGAACTCGTCCAGATCGCCGGTCGCGATGGCGACACCGCGCACAACCTGGAACGCGCCCTGGCG
GCCATCGCCGACTGTGCGGCGGACACCGAACTGGTGGTGTTCCCGGAAACCCACCTGACCGGCTTCCCCAGC
GAAGACAACATCGCCGCCCTTGCCGAGCCGCTCGACGGCCCGACGGTCAGCGCGGTGCAGCGCGTCGCCCGT
GAACGTAACGTTTCGGTGGCGATCGGCATCGCCGAGGCGGACGCCGGCCGCTACTACAACACCACCCTGCTG
ATCGCTCCCGACGGCATCGCCCTGAAATACCGCAAGACCCACCTGTGGGCCTCCGACCGCGGCATCTTCACG
CCTGGCGACCGCTACGCCACCGCCCTGTGGAACGGCATCCGGGTCGGCCTGCTGGTGTGCTTCGACATCGAG
TTCCCGGAAAGCGCGCGGGCCCTCGGCCAACTGGGTGCGGAACTGATCATCGTGACCAATGGCAACATGGAC
CCCTATGGCCCCACCCATCGCACCGCGATCATGGCCCGCGCCATGGAAAACCAGGCCTACGCGGTGATGGTC
AACCGCGTCGGGCATGGCGACGGCGGGCTGGTCTTCGCCGGCGGCAGCGCGGTGGTCGATCCCTACGGCCAG
TTGCTCTGCGAGGCCGGGCGCGAAGAATGCCGGCAGATCGTCGAACTGGACCTCGGCCGGTTGCAGGATGCG
CGTCGGGATTACCGTTACCTCGAAGAGCGTCGCCTGGTCCTGCCCGGCGAGCGCCGCGAGCACCCGGACGGC
CTGCGCGAACTGCTGATTCCCTGA
Translation:
MKVELVQIAGRDGDTAHNLERALAAIADCAADTELVVFPETHLTGFPSEDNIAALAEPLDGPTVSAVQRVAR
ERNVSVAIGIAEADAGRYYNTTLLIAPDGIALKYRKTHLWASDRGIFTPGDRYATALWNGIRVGLLVCFDIE
FPESARALGQLGAELIIVTNGNMDPYGPTHRTAIMARAMENQAYAVMVNRVGHGDGGLVFAGGSAVVDPYGQ
LLCEAGREECRQIVELDLGRLQDARRDYRYLEERRLVLPGERREHPDGLRELLIP*
AnnotationID:2896GeneID:2888
AnnotatorUID: diggins
Modification Date/Time: 2005-07-01 21:09:33
Gene Name:
Confidence Code:3
GeneProduct:putative carbon-nitrogen hydrolase family protein
Cell Localization:()
Synonyms:PA3598
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0388,pfam00795,KOG0806
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69440.1|AE016579_11 (AE016788) carbon-nitrogen hydrolase family protein [Pseudomonas
           putida KT2440]
          Length = 271

 Score =  401 bits (1030), Expect = e-111
 Identities = 193/271 (71%), Positives = 224/271 (82%)

>emb|CAB76877.1| (AL939109) putative hydrolase [Streptomyces coelicolor A3(2)]
          Length = 262

 Score =  158 bits (400), Expect = 3e-38
 Identities = 103/260 (39%), Positives = 138/260 (53%), Gaps = 5/260 (1%)

>gb|AAO54060.1| (AE016857) hydrolase, carbon-nitrogen family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 268

 Score =  129 bits (324), Expect = 2e-29
 Identities = 87/257 (33%), Positives = 131/257 (50%), Gaps = 7/257 (2%)






 
Structural Features:
COG0388, Predicted amidohydrolase
CD-Length = 274 residues,  95.3% aligned
Score =  184 bits (469), Expect = 1e-47
Identities = 101/261 (38%), Positives = 138/261 (52%), Gaps = 10/261 (3%)

pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.
CD-Length = 174 residues,  98.3% aligned
Score =  116 bits (292), Expect = 5e-27
Identities = 64/171 (37%), Positives = 92/171 (53%), Gaps = 10/171 (5%)

KOG0806, Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
CD-Length = 298 residues,  92.3% aligned
Score =  108 bits (271), Expect = 1e-24
Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 23/275 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5779




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22921




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31943




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2888_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2888
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4683
                           PA3598_tr
                           translation of PA3598
                           271
                           99.99
                           99.99
                           0
                           1400.0
     

     
     
134813
                           gb|AAG06986.1|AE004780_5
                           (AE004780) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           271
                           99.99
                           99.99
                           0
                           1400.0
     

     
     
134814
                           gb|AAN69440.1|AE016579_11
                           (AE016788) carbon-nitrogen hydrolase family protein [Pseudomonas putida KT2440]
                           271
                           71.21
                           82.65
                           0
                           1030.0
     

     
     
134815
                           gb|AAN66013.1|AE016230_4
                           (AE016775) carbon-nitrogen hydrolase family protein [Pseudomonas putida KT2440]
                           285
                           38.24
                           51.57
                           35
                           420.0
     

     






      

          
GC ORFID: 45890How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3598Glimmer Score: 

          
Start: 3430592Stop: 3429777

          
Length: 816


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3598 translation of PA3598Homolog Bit Score 543.0

          
Other Homologs:  t_PA3598 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGTCGAACTCGTCCAGATCGCCGGTCGCGATGGCGACACCGCGCACAACCTGGAACGCGCCCTGGCG 
GCCATCGCCGACTGTGCGGCGGACACCGAACTGGTGGTGTTCCCGGAAACCCACCTGACCGGCTTCCCCAGC 
GAAGACAACATCGCCGCCCTTGCCGAGCCGCTCGACGGCCCGACGGTCAGCGCGGTGCAGCGCGTCGCCCGT 
GAACGTAACGTTTCGGTGGCGATCGGCATCGCCGAGGCGGACGCCGGCCGCTACTACAACACCACCCTGCTG 
ATCGCTCCCGACGGCATCGCCCTGAAATACCGCAAGACCCACCTGTGGGCCTCCGACCGCGGCATCTTCACG 
CCTGGCGACCGCTACGCCACCGCCCTGTGGAACGGCATCCGGGTCGGCCTGCTGGTGTGCTTCGACATCGAG 
TTCCCGGAAAGCGCGCGGGCCCTCGGCCAACTGGGTGCGGAACTGATCATCGTGACCAATGGCAACATGGAC 
CCCTATGGCCCCACCCATCGCACCGCGATCATGGCCCGCGCCATGGAAAACCAGGCCTACGCGGTGATGGTC 
AACCGCGTCGGGCATGGCGACGGCGGGCTGGTCTTCGCCGGCGGCAGCGCGGTGGTCGATCCCTACGGCCAG 
TTGCTCTGCGAGGCCGGGCGCGAAGAATGCCGGCAGATCGTCGAACTGGACCTCGGCCGGTTGCAGGATGCG 
CGTCGGGATTACCGTTACCTCGAAGAGCGTCGCCTGGTCCTGCCCGGCGAGCGCCGCGAGCACCCGGACGGC 
CTGCGCGAACTGCTGATTCCCTGA