ViewGene
Locus Name:
GeneID:
Location:

GeneID:2887
TrivialName: PA14_20760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20760
PAO1 Ortholog Locus:PA3348
Sequence Length:825
Protein Length:274
Start: 1786415
Stop: 1787239
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06736.1|AE004757_5 (AE004757) probable chemotaxis protein methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 274/274 (100%), Positives = 274/274 (100%)
Sequence:
GTGTCGGCAGCTAATGCGGATTTCGAGTTGTTCAGGGTCTTCCTCGAGAAGACCTGCGGCATTGTGCTGGGC
AGCAACAAGCAGTACCTGGTCTCGAGCCGGCTGAACAAGCTGATGGAGCAGCAGGGCATCAAGAGCCTGGGA
GAGCTGGTGCAGCGCATCCAGACCCAGCGCGGCGGCCTGCGCGAGATGGTGGTGGACGCGATGACCACCAAC
GAGACCCTGTGGTTTCGCGATACCTACCCGTTCGAGGTGCTCAAGCAGCGGGTTCTTCCCGAACTGATCAAG
GCCAACGGCGGGCAGCGCCTGCGGATCTGGTCGGCGGCCTGTTCGTCCGGCCAGGAGCCGTACTCGCTGTCG
ATGGCCATCGACGAGTTCGAGAAGACCAACCTGGGGCAGTTGAAGGCGGGCGTGCAGATCGTCGCCACCGAC
CTGTCGGGGTCGATGCTCACCGCCGCCAAGGCCGGTGAATACGACACCCTGGCGATGGGCCGCGGCCTGTCC
CCGGAGCGTCTGCAACGCTATTTCGACGCCAAGGGGCCGGGGCGCTGGGCGGTCAAGCCGGCGATCCGCAGC
CGCGTCGAGTTCCGCGCCCTGAACCTGCTGGACAGCTACGCCAGCCTCGGCAAGTTCGACATGGTGTTCTGC
CGCAACGTGCTGATCTATTTCTCCGCCGAGGTGAAGCGCGACATCCTGCTGCGCATCCATGGCACGCTCAAG
CCTGGCGGCTACCTGTTCCTCGGCGCCTCCGAGGCGTTGAACAACCTGCCCGACCACTACCAGATGGTGCAG
TGCAGCCCGGGCATCATCTACCGGGCCAAGTAG
Translation:
MSAANADFELFRVFLEKTCGIVLGSNKQYLVSSRLNKLMEQQGIKSLGELVQRIQTQRGGLREMVVDAMTTN
ETLWFRDTYPFEVLKQRVLPELIKANGGQRLRIWSAACSSGQEPYSLSMAIDEFEKTNLGQLKAGVQIVATD
LSGSMLTAAKAGEYDTLAMGRGLSPERLQRYFDAKGPGRWAVKPAIRSRVEFRALNLLDSYASLGKFDMVFC
RNVLIYFSAEVKRDILLRIHGTLKPGGYLFLGASEALNNLPDHYQMVQCSPGIIYRAK*
AnnotationID:2895GeneID:2887
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 10:10:57
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis protein methyltransferase
Cell Localization:()
Synonyms:cheR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00138,pfam01739,COG1352
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69970.1|AE016635_6 (AE016790) chemotaxis protein methyltransferase CheR [Pseudomonas
           putida KT2440]
          Length = 275

 Score =  473 bits (1217), Expect = e-133
 Identities = 235/275 (85%), Positives = 251/275 (91%), Gaps = 1/275 (0%)

>gb|AAO55446.1| (AE016862) chemotaxis protein methyltransferase CheR [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 280

 Score =  459 bits (1182), Expect = e-129
 Identities = 228/275 (82%), Positives = 247/275 (89%), Gaps = 1/275 (0%)

>gb|AAO08764.1|AE016797_219 (AE016797) Methylase of chemotaxis methyl-accepting protein CheR
           [Vibrio vulnificus CMCP6]
          Length = 275

 Score =  279 bits (713), Expect = 1e-74
 Identities = 145/275 (52%), Positives = 196/275 (71%), Gaps = 4/275 (1%)






 
Structural Features:
smart00138, MeTrc, Methyltransferase, chemotaxis proteins
CD-Length = 264 residues,  99.6% aligned
Score =  253 bits (647), Expect = 2e-68
Identities = 113/268 (42%), Positives = 157/268 (58%), Gaps = 7/268 (2%)

pfam01739, CheR, CheR methyltransferase, SAM binding domain
CD-Length = 195 residues, 100.0% aligned
Score =  243 bits (623), Expect = 1e-65
Identities = 100/199 (50%), Positives = 126/199 (63%), Gaps = 4/199 (2%)

COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 268 residues,  99.3% aligned
Score =  297 bits (761), Expect = 1e-81
Identities = 110/270 (40%), Positives = 158/270 (58%), Gaps = 4/270 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14689




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22919




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32207




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2887_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2887
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4682
                           PA3348_tr
                           translation of PA3348
                           274
                           99.99
                           99.99
                           0
                           1398.0
     

     
     
134794
                           gb|AAG06736.1|AE004757_5
                           (AE004757) probable chemotaxis protein methyltransferase [Pseudomonas aeruginosa PAO1]
                           274
                           99.63
                           99.99
                           0
                           1395.0
     

     
     
134795
                           dbj|BAA33556.1|
                           (AB012768) CheR [Pseudomonas aeruginosa]
                           274
                           99.63
                           99.99
                           0
                           1395.0
     

     
     
134796
                           gb|AAN69970.1|AE016635_6
                           (AE016790) chemotaxis protein methyltransferase CheR [Pseudomonas putida KT2440]
                           275
                           85.09
                           91.27
                           1
                           1215.0
     

     
     
134797
                           gb|AAO55446.1|
                           (AE016862) chemotaxis protein methyltransferase CheR [Pseudomonas syringae pv. tomato str. DC3000]
                           280
                           81.42
                           88.21
                           6
                           1183.0
     

     






      

          
GC ORFID: 45889How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3348Glimmer Score: 

          
Start: 3167517Stop: 3166693

          
Length: 825


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3348 translation of PA3348Homolog Bit Score 543.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7886 (ORF: BLASTX 463.0), t_PA3348 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCGGCAGCTAATGCGGATTTCGAGTTGTTCAGGGTCTTCCTCGAGAAGACCTGCGGCATTGTGCTGGGC 
AGCAACAAGCAGTACCTGGTCTCGAGCCGGCTGAACAAGCTGATGGAGCAGCAGGGCATCAAGAGCCTGGGA 
GAGCTGGTGCAGCGCATCCAGACCCAGCGCGGCGGCCTGCGCGAGATGGTGGTGGACGCGATGACCACCAAC 
GAGACCCTGTGGTTTCGCGATACCTACCCGTTCGAGGTGCTCAAGCAGCGGGTTCTTCCCGAACTGATCAAG 
GCCAACGGCGGGCAGCGCCTGCGGATCTGGTCGGCGGCCTGTTCGTCCGGCCAGGAGCCGTACTCGCTGTCG 
ATGGCCATCGACGAGTTCGAGAAGACCAACCTGGGGCAGTTGAAGGCGGGCGTGCAGATCGTCGCCACCGAC 
CTGTCGGGGTCGATGCTCACCGCCGCCAAGGCCGGTGAATACGACACCCTGGCGATGGGCCGCGGCCTGTCC 
CCGGAGCGTCTGCAACGCTATTTCGACGCCAAGGGGCCGGGGCGCTGGGCGGTCAAGCCGGCGATCCGCAGC 
CGCGTCGAGTTCCGCGCCCTGAACCTGCTGGACAGCTACGCCAGCCTCGGCAAGTTCGACATGGTGTTCTGC 
CGCAACGTGCTGATCTATTTCTCCGCCGAGGTGAAGCGCGACATCCTGCTGCGCATCCATGGCACGCTCAAG 
CCTGGCGGCTACCTGTTCCTCGGCGCCTCCGAGGCGTTGAACAACCTGCCCGACCACTACCAGATGGTGCAG 
TGCAGCCCGGGCATCATCTACCGGGCCAAGTAG