ViewGene
Locus Name:
GeneID:
Location:

GeneID:2886
TrivialName: PA14_22290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22290
PAO1 Ortholog Locus:PA3239
Sequence Length:804
Protein Length:267
Start: 1942528
Stop: 1941725
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06627.1|AE004746_11 (AE004746) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 260/267 (97%), Positives = 265/267 (99%)
Sequence:
ATGAGCCGAACCGCACACTGGATGTTCGCCCTTCTGCTGAGCGCAGCCGCCAGCGCCCAGGCCGACCAGGCC
GCCGCGCCGGTCGAAATGCCGCCACGTCAGCTCGACGGCGACGGTTTCAGCCGTCCGCTGGACCAACTCAAG
TTCAATCCCGGCCTGGATCAACGCGAATTCGAGCGCGCCACCCTCGACGCACTGAACATGTACGATCCCTGG
GAATCCTGGAACCGCCGGGTCTACCACTTCAACTATCGCTTCGACGAGTGGGTGTTCCTGCCCGTGGTACGA
GGCTACGAGTACGTCACCCCGCACTTCGTCCGCAGCGGCGTGAGCAATTTCTTCGACAACCTCGGCGACGTG
CCCAACCTGCTGAACAACCTCGCCCAGTTGAAGGGCAAGGCGGCGATGGAAACCACCGCGCGGCTGCTGTTC
AACACCACCTTCGGCGTGCTCGGCCTGTGGGACCCGGCGACCAAGATGGGCCTGCACAAGCGCAGCGAGGAT
TTCGGCCAGACCCTCGGCTTCTACGGCGTGGGCGGCGGCCCCTACCTGATGCTGCCAATCCTCGGCCCGTCC
AACCTGCGCGACACCGGCGGACTGGTGGTGGACTACGTCGGCGAATACCAGGTGAACTACCTCAACGTTCCC
CAGGCCAGCGGCGACCACCCGGAGATCACCGCCCTGCGCGTGGTGGACAGGCGCTACAACACCAGCTTCCGC
TACGGCCAGATGAACTCGCCGTTCGAGTACGAGAAACTGCGCTACATCTATACCGAGGCGCGCAAGCTGCAG
ATCGCCGAGTGA
Translation:
MSRTAHWMFALLLSAAASAQADQAAAPVEMPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPW
ESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLF
NTTFGVLGLWDPATKMGLHKRSEDFGQTLGFYGVGGGPYLMLPILGPSNLRDTGGLVVDYVGEYQVNYLNVP
QASGDHPEITALRVVDRRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE*
AnnotationID:2894GeneID:2886
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 13:01:57
Gene Name:vacJ
Confidence Code:3
GeneProduct:putative surface lipoprotein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04333,COG2853
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL94485.1| (AE010540) Lipoprotein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 260

 Score =  176 bits (447), Expect = 1e-43
 Identities = 91/203 (44%), Positives = 127/203 (62%), Gaps = 6/203 (2%)

>gb|AAN67776.1|AE016409_2 (AE016782) vacJ lipoprotein [Pseudomonas putida KT2440]
          Length = 235

 Score =  153 bits (387), Expect = 9e-37
 Identities = 80/174 (45%), Positives = 104/174 (59%), Gaps = 4/174 (2%)






 
Structural Features:
pfam04333, VacJ, VacJ like lipoprotein
CD-Length = 200 residues, 100.0% aligned
Score =  260 bits (667), Expect = 8e-71
Identities = 97/201 (48%), Positives = 123/201 (61%), Gaps = 1/201 (0%)

COG2853, VacJ, Surface lipoprotein 
[Cell envelope biogenesis, outer membrane]
CD-Length = 250 residues,  91.6% aligned
Score =  269 bits (688), Expect = 4e-73
Identities = 105/239 (43%), Positives = 127/239 (53%), Gaps = 10/239 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5775




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22917




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32304




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2886_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2886
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4680
                           PA3239_tr
                           translation of PA3239
                           267
                           97.37
                           99.25
                           0
                           1400.0
     

     
     
134777
                           gb|AAG06627.1|AE004746_11
                           (AE004746) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           267
                           97.37
                           99.25
                           0
                           1400.0
     

     
     
134778
                           gb|AAO55140.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           270
                           67.77
                           79.25
                           3
                           983.0
     

     
     
134779
                           gb|AAN67357.1|AE016362_1
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           274
                           65.32
                           74.45
                           33
                           956.0
     

     
     
134780
                           gb|AAR36062.1|
                           (AE017216) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           280
                           43.57
                           54.28
                           39
                           503.0
     

     






      

          
GC ORFID: 45888How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3239Glimmer Score: 

          
Start: 3011403Stop: 3012206

          
Length: 804


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3239 translation of PA3239Homolog Bit Score 543.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6000 (ORF: BLASTX 383.0), t_PA2800 (ORF: BLASTX 166.0), t_PA3239 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGAACCGCACACTGGATGTTCGCCCTTCTGCTGAGCGCAGCCGCCAGCGCCCAGGCCGACCAGGCC 
GCCGCGCCGGTCGAAATGCCGCCACGTCAGCTCGACGGCGACGGTTTCAGCCGTCCGCTGGACCAACTCAAG 
TTCAATCCCGGCCTGGATCAACGCGAATTCGAGCGCGCCACCCTCGACGCACTGAACATGTACGATCCCTGG 
GAATCCTGGAACCGCCGGGTCTACCACTTCAACTATCGCTTCGACGAGTGGGTGTTCCTGCCCGTGGTACGA 
GGCTACGAGTACGTCACCCCGCACTTCGTCCGCAGCGGCGTGAGCAATTTCTTCGACAACCTCGGCGACGTG 
CCCAACCTGCTGAACAACCTCGCCCAGTTGAAGGGCAAGGCGGCGATGGAAACCACCGCGCGGCTGCTGTTC 
AACACCACCTTCGGCGTGCTCGGCCTGTGGGACCCGGCGACCAAGATGGGCCTGCACAAGCGCAGCGAGGAT 
TTCGGCCAGACCCTCGGCTTCTACGGCGTGGGCGGCGGCCCCTACCTGATGCTGCCAATCCTCGGCCCGTCC 
AACCTGCGCGACACCGGCGGACTGGTGGTGGACTACGTCGGCGAATACCAGGTGAACTACCTCAACGTTCCC 
CAGGCCAGCGGCGACCACCCGGAGATCACCGCCCTGCGCGTGGTGGACAGGCGCTACAACACCAGCTTCCGC 
TACGGCCAGATGAACTCGCCGTTCGAGTACGAGAAACTGCGCTACATCTATACCGAGGCGCGCAAGCTGCAG 
ATCGCCGAGTGA