ViewGene
Locus Name:
GeneID:
Location:

GeneID:2885
TrivialName: PA14_24260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24260
PAO1 Ortholog Locus:PA3084
Sequence Length:801
Protein Length:266
Start: 2104434
Stop: 2105234
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06472.1|AE004732_6 (AE004732) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 266/266 (100%), Positives = 266/266 (100%)
Sequence:
ATGACGGCGCGCCTGGAAAGCAATGCTCCCGTGCAATACGCCTTCCGCCTCGACGACCGCGAAGTCGCGGTG
AACCCGCTGATCGGCCGGCCGCTGCGCCTGGAGTACCTCGGCAGCATCTTCTGCACCCATTGCGGCCGCAAG
ACGAAGAAGAGTTTCAGCCAGGGCTATTGCTATCCTTGCTTCACCCGGCTGGCGCAGTGCGACAGTTGCATC
GTCAGCCCGGAGAAGTGCCACTACGAGCAGGGCACCTGCCGCGAACCGGAGTGGGGCGAGCGGTTCTGCATG
ACCGATCACGTGGTGTACCTGGCCAACTCCTCCGGGGTGAAGGTCGGCATCACCCGCGCCAGCCAGATTCCC
ACCCGCTGGATCGACCAGGGCGCGCGCCAGGCGCTGCCGATCCTGCGCGTGGCCACCCGCCAGCAGTCCGGC
CTGGTGGAAGACCTGCTGCGCAGCCAGGTCGCCGACCGCACCAACTGGCGAGCCATGCTCAAGGGCGAGGCC
GAGCCGGTCGACCTGGCGGCAGTCCGCGAGCAGTTGTTCGACCAGTGCGCCGACGGCCTGCGCGAATTGCAG
CAACGTTTCGGCCTGCAGGCGATCCAACCGGTTATCGACCTCGATCCGCTCGAGATCGCCTACCCGGTCGAG
GCCTACCCGAGCAAGGTCGCCAGCCTCGACCTGGAAAAAACGCCTATCGTCGAAGGCACGCTTCGCGGTATC
AAGGGCCAGTACCTGATCCTCGATACCGGGGTGATCAACATTCGCAAATACACGGCCTACCAGATCGCCGTG
CATCACTGA
Translation:
MTARLESNAPVQYAFRLDDREVAVNPLIGRPLRLEYLGSIFCTHCGRKTKKSFSQGYCYPCFTRLAQCDSCI
VSPEKCHYEQGTCREPEWGERFCMTDHVVYLANSSGVKVGITRASQIPTRWIDQGARQALPILRVATRQQSG
LVEDLLRSQVADRTNWRAMLKGEAEPVDLAAVREQLFDQCADGLRELQQRFGLQAIQPVIDLDPLEIAYPVE
AYPSKVASLDLEKTPIVEGTLRGIKGQYLILDTGVINIRKYTAYQIAVHH*
AnnotationID:2893GeneID:2885
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 17:05:24
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5773




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22915




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2885
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4679
                           PA3084_tr
                           translation of PA3084
                           266
                           99.99
                           99.99
                           0
                           1400.0
     

     
     
134768
                           gb|AAG06472.1|AE004732_6
                           (AE004732) hypothetical protein PA3084 [Pseudomonas aeruginosa PAO1]
                           266
                           99.99
                           99.99
                           0
                           1400.0
     

     
     
134769
                           gb|AAO57258.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           266
                           74.43
                           87.59
                           0
                           1099.0
     

     
     
134770
                           gb|AAN67630.1|AE016392_11
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           278
                           70.86
                           83.81
                           14
                           1079.0
     

     
     
134771
                           dbj|BAC59517.1|
                           (AP005077) conserved hypothetical protein [Vibrio parahaemolyticus]
                           277
                           49.81
                           68.23
                           14
                           762.0
     

     






      

          
GC ORFID: 45887How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3084Glimmer Score: 

          
Start: 2849496Stop: 2848696

          
Length: 801


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3084 translation of PA3084Homolog Bit Score 543.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene723 (ORF: BLASTX 449.0), t_PA3084 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGCGCGCCTGGAAAGCAATGCTCCCGTGCAATACGCCTTCCGCCTCGACGACCGCGAAGTCGCGGTG 
AACCCGCTGATCGGCCGGCCGCTGCGCCTGGAGTACCTCGGCAGCATCTTCTGCACCCATTGCGGCCGCAAG 
ACGAAGAAGAGTTTCAGCCAGGGCTATTGCTATCCTTGCTTCACCCGGCTGGCGCAGTGCGACAGTTGCATC 
GTCAGCCCGGAGAAGTGCCACTACGAGCAGGGCACCTGCCGCGAACCGGAGTGGGGCGAGCGGTTCTGCATG 
ACCGATCACGTGGTGTACCTGGCCAACTCCTCCGGGGTGAAGGTCGGCATCACCCGCGCCAGCCAGATTCCC 
ACCCGCTGGATCGACCAGGGCGCGCGCCAGGCGCTGCCGATCCTGCGCGTGGCCACCCGCCAGCAGTCCGGC 
CTGGTGGAAGACCTGCTGCGCAGCCAGGTCGCCGACCGCACCAACTGGCGAGCCATGCTCAAGGGCGAGGCC 
GAGCCGGTCGACCTGGCGGCAGTCCGCGAGCAGTTGTTCGACCAGTGCGCCGACGGCCTGCGCGAATTGCAG 
CAACGTTTCGGCCTGCAGGCGATCCAACCGGTTATCGACCTCGATCCGCTCGAGATCGCCTACCCGGTCGAG 
GCCTACCCGAGCAAGGTCGCCAGCCTCGACCTGGAAAAAACGCCTATCGTCGAAGGCACGCTTCGCGGTATC 
AAGGGCCAGTACCTGATCCTCGATACCGGGGTGATCAACATTCGCAAATACACGGCCTACCAGATCGCCGTG 
CATCACTGA