ViewGene

Locus Name:
GeneID:
Location:

GeneID:2884
TrivialName: PA14_35470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35470
PAO1 Ortholog Locus:PA2251
Sequence Length:819
Protein Length:272
Start: 3153711
Stop: 3154529
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05639.1|AE004651_1 (AE004651) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 269/272 (98%), Positives = 270/272 (99%)
Sequence:
ATGTCCGAGCACCTGGGCGCCAATCTCAAGCTGCTTTGCAGCCATTACCGCTCGATTTCCGAGGTTTGCCGG
CAATTGGCGATCAATCGCGCGCAGTTCAACAAGTACCTCAGCGGCCAGAGCCAGCCGACGCCCTACAACCGC
AAGCGGATCGGCGACTTCTTCGGCGTCGAGGACTACGAGCTGGGCTTGCCGCCCGAACAGTTCGCCCGCCTG
ATCGGCGCCCGTGCCAGCGCCCAGCCGCGCCAGTCCAGCAACGACCCGCTGTTGCGGCTGCTGCAACCGCTG
CGCGCCGAGGCCGGCGACCTGGGCCGCTACTGCGGCTACTACTTCGAATATGCCAACTGCATGTCGGTGCCA
GGCAGCATCCTGCTCTCCCTGGTGCATCTCTACGAGGAGGACGGGGTGTTCCTCTTCGAGCGCCAGGAACGC
CAGGAGCGCACCAGCAGTACCGACGTGCAGGCAGAGGAGTGGGCGCGTTGCCGTTATCTCGGCGCGGCCTTC
CAGTTGCAGGACCGGGTGTTCCTGATCGACTACGAGTCGCTGACCCTCAACGAGATGAGCCAGACCATCCTC
ATTCCCAGTTTCAAGAGCCGTATCACCCGCCTGAACGGCCTGAAGATGGGCGTTTCCAGCGGTGACCGGCGG
ACCCCGGCATGCAGCCGGGTGGTCTGGGAGTACCTCGGTGCGGAAATCAACCGGATCAACGCCTACCGCCAG
GTGCGCCTGTACCGCCCGGACGATCCGCGGATCGACGAGGATATTCGCCAGCGCCTGGCGGCGGGGAGCTTG
CGGCATGGGTTGCTGGAGACGGAGTGA
Translation:
MSEHLGANLKLLCSHYRSISEVCRQLAINRAQFNKYLSGQSQPTPYNRKRIGDFFGVEDYELGLPPEQFARL
IGARASAQPRQSSNDPLLRLLQPLRAEAGDLGRYCGYYFEYANCMSVPGSILLSLVHLYEEDGVFLFERQER
QERTSSTDVQAEEWARCRYLGAAFQLQDRVFLIDYESLTLNEMSQTILIPSFKSRITRLNGLKMGVSSGDRR
TPACSRVVWEYLGAEINRINAYRQVRLYRPDDPRIDEDIRQRLAAGSLRHGLLETE*
AnnotationID:2892GeneID:2884
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 06:06:29
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:PA2251
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:5771
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22914
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2884

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4678 PA2251_tr translation of PA2251 272 98.89 99.26 0 1400.0
134766 gb|AAG05639.1|AE004651_1 (AE004651) hypothetical protein PA2251 [Pseudomonas aeruginosa PAO1] 272 98.89 99.26 0 1400.0
134767 gb|AAN66126.1|AE016241_3 (AE016775) transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] 272 77.94 86.02 3 1103.0
GC ORFID: 45886How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2251Glimmer Score:
Start: 1800205Stop: 1799387
Length: 819
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2251 translation of PA2251Homolog Bit Score 543.0
Other Homologs: t_PA2251 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGAGCACCTGGGCGCCAATCTCAAGCTGCTTTGCAGCCATTACCGCTCGATTTCCGAGGTTTGCCGG
CAATTGGCGATCAATCGCGCGCAGTTCAACAAGTACCTCAGCGGCCAGAGCCAGCCGACGCCCTACAACCGC
AAGCGGATCGGCGACTTCTTCGGCGTCGAGGACTACGAGCTGGGCTTGCCGCCCGAACAGTTCGCCCGCCTG
ATCGGCGCCCGTGCCAGCGCCCAGCCGCGCCAGTCCAGCAACGACCCGCTGTTGCGGCTGCTGCAACCGCTG
CGCGCCGAGGCCGGCGACCTGGGCCGCTACTGCGGCTACTACTTCGAATATGCCAACTGCATGTCGGTGCCA
GGCAGCATCCTGCTCTCCCTGGTGCATCTCTACGAGGAGGACGGGGTGTTCCTCTTCGAGCGCCAGGAACGC
CAGGAGCGCACCAGCAGTACCGACGTGCAGGCAGAGGAGTGGGCGCGTTGCCGTTATCTCGGCGCGGCCTTC
CAGTTGCAGGACCGGGTGTTCCTGATCGACTACGAGTCGCTGACCCTCAACGAGATGAGCCAGACCATCCTC
ATTCCCAGTTTCAAGAGCCGTATCACCCGCCTGAACGGCCTGAAGATGGGCGTTTCCAGCGGTGACCGGCGG
ACCCCGGCATGCAGCCGGGTGGTCTGGGAGTACCTCGGTGCGGAAATCAACCGGATCAACGCCTACCGCCAG
GTGCGCCTGTACCGCCCGGACGATCCGCGGATCGACGAGGATATTCGCCAGCGCCTGGCGGCGGGGAGCTTG
CGGCATGGGTTGCTGGAGACGGAGTGA