ViewGene
Locus Name:
GeneID:
Location:

GeneID:288
TrivialName: PA14_10340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10340
PAO1 Ortholog Locus:PA4143
Sequence Length:2160
Protein Length:719
Start: 893717
Stop: 891558
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07530.1|AE004831_2 (AE004831) probable toxin transporter [Pseudomonas aeruginosa PAO1]
Identities = 715/719 (99%), Positives = 716/719 (99%)
Sequence:
ATGGCCTTTCTCGACGCTCTCGCCCTGCGCCTGGGCCGCCGCCTGCCGCTGGTGCTGCAGACCGAAGCCACC
GAATGCGGCCTGGCCTGCCTGGCGATGATCGCCGGCTACCACGGCCACCATACCGGCCTGATGGAACTGCGC
CGGCGCTTCTCCGTATCGCTCAAGGGCATCTCCCTCAAGCAACTGATCCAGACCGCCCACCGCCTCGGCCTG
GGCACCCGCGCGGTGAAGCTCGACCTCGGCGACCTCGGCAAGCTCAAGCTGCCCTGCGTGCTGCACTGGAAC
TTCAACCACTTCGTCGTGCTCAAGGCGGTCGACGGGCGCGGCGCGGTGCTCCACGACCCCGCCCACGGCCAG
CGCCGGCTGGGCCTGGAGGAAGTCTCGCGGAGCTTCACCGGGGTAGCCCTGGAATTCTGGCCGGAGAGCGGC
TTCGAGAAACAGGAGGCGCCGCCGCGGATCAAGCTGCTGGGCATGCTCGGCAAGGTCACCGGGCTGTACCGC
TCGCTGGCCCAGGTGCTGCTGCTCGCCGGCGCGCTGGAAGTGTTCTCGCTGATCAGTCCGTTCTTCCTGCAA
TGGACCATCGACAACGTCATCGTCAGCGAAGACCGTGACCTGCTCAGCACCCTGGCCATCGGCTTCGGCCTG
TTGCTGCTGATGCAGCAGGCGGTCAGCGGGGTGCGCGCCTGGGTGATGATGCACATGAGCACCCTGCTCGGC
GTGCAGTGGCAGGCCAACGTCTTCAGCCACCTGCTGCGGCTGCCCGCGCAGTATTTCGAGAAGCGCCACCTG
GGCGACGTGGTGTCGCGCTTCGGCGCGGTGAACAGCATCCAGCAGACCCTCACCGCGGCCTTCCTCTCGGCG
GTGCTGGACGGCCTGATGACCGTCGCCACCCTCGGCATGATGCTGCTCTACAGTCCGCCGCTGGCGGCCATC
GCCATCGCCGCCATGAGCCTCTACGCCCTCGGCCGCTGGATCTGGTACCGGCCGTTGCGCAACGCCACCGAG
GAGCAGATCGTCCACGCCGCGCGGCAGCAGAGCCACTTCCTCGAGACGGTGCGCGGCATCCGCCCGCTGAAG
CTGTTCCAGCGCCAGGACGAGCGCCGCTCGGTATGGCTCGGCCTGCTGGTGGAACAGATCAACGCCGGCCTG
CGTACGCAGAAGCTGCAACTGTTCTACCAGCAGCTCAACGGCCTGCTGTTCGGCGTGGAGAACCTGCTGGTG
ATCTGGCTCGGCGCGACCATGGTGATGGACGGTCAGTTCAGCGTCGGCATCCTGATGGCCTTCAACGCCTAC
AAGTCGCAGTTCGACAGCCGCGTCGGCAGCCTGATCGACAAGTTCTTCGAGCTGCGCATGCTCCAGTTGCAG
GGCGAGCGCCTGGCCGACATCGTCCTCCAGGCCCCGGAGGTCAGCCACGGCGACATCCTCCCGGAGAACCTC
CGCGATCGCGAGGCGAGCATCGAGATCCAGGGCCTGCGCTACCGCTACGCGGAACAGGAGCCCTGGGTCCTC
GACGGCCTCGACCTGCGCATCGCCGGCGGTGAGTCGGTGGCCATCGTCGGCCCCTCGGGCTGCGGCAAGAGC
ACCCTGCTCAACGTCCTGCTGGGCATCCTCCCGCCAGTGGGGGGACAGATCCGCATGGCCGGCCTGGACCTT
GCGCAACTGGGCCTGGACGGCCTGCGCGAACTGGTCGGCACGGTGCTGCAGGACGACGTGCTGTTCGCCGGT
TCGCTCAGCGACAACATCAGTTTCTTCGACCCGCAGCCGGACATGCCCTGGCTGCTGCAGTGCGCGCAGATG
GCTGCCATCCACGATGACATCCAGGCCATGCCGATGGGCTACAACACCCTGGTCGGCGACATGGGCACGGTG
CTCTCCGGCGGCCAGAAGCAGCGGGTGATGCTGGCCCGGGCGCTGTACAAGAAGCCGCGCATCCTGTTCCTC
GACGAAGCCACCAGCCACCTCGACGTACACTGCGAACAGCGGGTCAACGCCGCCATTCGCGCGCTGCGCATC
ACCCGCATCATGGTCGCCCATCGGCCCGAGACCATCGCCTCGGCGGACCGCGTGATAGTCCTCGGCCAGGGC
AAGGTAAGCCTCGACGAAAGCACCGCGCGCCTGGCCGAACGCCAGGCCGCCGCGGCGCGGGAGCAGGCCTGA
Translation:
MAFLDALALRLGRRLPLVLQTEATECGLACLAMIAGYHGHHTGLMELRRRFSVSLKGISLKQLIQTAHRLGL
GTRAVKLDLGDLGKLKLPCVLHWNFNHFVVLKAVDGRGAVLHDPAHGQRRLGLEEVSRSFTGVALEFWPESG
FEKQEAPPRIKLLGMLGKVTGLYRSLAQVLLLAGALEVFSLISPFFLQWTIDNVIVSEDRDLLSTLAIGFGL
LLLMQQAVSGVRAWVMMHMSTLLGVQWQANVFSHLLRLPAQYFEKRHLGDVVSRFGAVNSIQQTLTAAFLSA
VLDGLMTVATLGMMLLYSPPLAAIAIAAMSLYALGRWIWYRPLRNATEEQIVHAARQQSHFLETVRGIRPLK
LFQRQDERRSVWLGLLVEQINAGLRTQKLQLFYQQLNGLLFGVENLLVIWLGATMVMDGQFSVGILMAFNAY
KSQFDSRVGSLIDKFFELRMLQLQGERLADIVLQAPEVSHGDILPENLRDREASIEIQGLRYRYAEQEPWVL
DGLDLRIAGGESVAIVGPSGCGKSTLLNVLLGILPPVGGQIRMAGLDLAQLGLDGLRELVGTVLQDDVLFAG
SLSDNISFFDPQPDMPWLLQCAQMAAIHDDIQAMPMGYNTLVGDMGTVLSGGQKQRVMLARALYKKPRILFL
DEATSHLDVHCEQRVNAAIRALRITRIMVAHRPETIASADRVIVLGQGKVSLDESTARLAERQAAAAREQA*
AnnotationID:298GeneID:288
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 15:03:33
Gene Name:
Confidence Code:3
GeneProduct:putative toxin transporter
Cell Localization:()
Synonyms:cvaB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:putative colicin V secretion ABC transporter ATP-binding protein
Functional Category Confidence Code:5
COGs:COG2274,COG1132
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO28374.1| (AE012554) colicin V secretion ABC transporter ATP-binding protein
           [Xylella fastidiosa Temecula1]
          Length = 707

 Score =  741 bits (1913), Expect = 0.0
 Identities = 365/682 (53%), Positives = 505/682 (74%), Gaps = 3/682 (0%)

>gb|AAN52985.1|AE015912_10 (AE015912) toxin secretion ABC transporter, ATP-binding
           subunit/permease protein, putative [Shewanella
           oneidensis MR-1]
          Length = 725

 Score =  673 bits (1737), Expect = 0.0
 Identities = 335/711 (47%), Positives = 492/711 (69%), Gaps = 5/711 (0%)

>gb|AAM89122.1|AF389909_3 (AF389909) putative ABC transporter protein RaxB [Xanthomonas
           oryzae pv. oryzae]
          Length = 719

 Score =  658 bits (1698), Expect = 0.0
 Identities = 343/706 (48%), Positives = 479/706 (67%), Gaps = 5/706 (0%)






 
Structural Features:
COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal 
double-glycine peptidase domain 
[Defense mechanisms]
CD-Length = 709 residues,  99.2% aligned
Score =  701 bits (1812), Expect = 0.0
Identities = 285/705 (40%), Positives = 409/705 (58%), Gaps = 4/705 (0%)

COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components 
[Defense mechanisms]
CD-Length = 567 residues,  96.6% aligned
Score =  308 bits (791), Expect = 1e-84
Identities = 173/554 (31%), Positives = 283/554 (51%), Gaps = 9/554 (1%)






   
Genomic Context:






   
Comment:
other possible gene names: raxB, cyaB


















    ReferenceID:579




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17721




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36883




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:288_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:288
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
474
                           PA4143_tr
                           translation of PA4143
                           719
                           99.44
                           99.58
                           0
                           3615.0
     

     
     
24723
                           gb|AAG07530.1|AE004831_2
                           (AE004831) probable toxin transporter [Pseudomonas aeruginosa PAO1]
                           719
                           99.44
                           99.58
                           0
                           3615.0
     

     
     
24724
                           gb|AAQ57747.1|
                           (AE016910) probable colicin V secretion atp-binding protein [Chromobacterium violaceum ATCC 12472]
                           732
                           54.37
                           72.13
                           18
                           2029.0
     

     
     
24725
                           gb|AAF61810.1|
                           (AF129811) unknown [Moraxella catarrhalis]
                           724
                           52.76
                           70.85
                           39
                           1971.0
     

     
     
24726
                           gb|AAO28374.1|
                           (AE012554) colicin V secretion ABC transporter ATP-binding protein [Xylella fastidiosa Temecula1]
                           734
                           50.13
                           69.34
                           42
                           1908.0
     

     






      

          
GC ORFID: 43290How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4143Glimmer Score: 

          
Start: 4060220Stop: 4062379

          
Length: 2160


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4143 translation of PA4143Homolog Bit Score 1397.0

          
Other Homologs:  t_PA4143 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCTTTCTCGACGCTCTCGCCCTGCGCCTGGGCCGCCGCCTGCCGCTGGTGCTGCAGACCGAAGCCACC 
GAATGCGGCCTGGCCTGCCTGGCGATGATCGCCGGCTACCACGGCCACCATACCGGCCTGATGGAACTGCGC 
CGGCGCTTCTCCGTATCGCTCAAGGGCATCTCCCTCAAGCAACTGATCCAGACCGCCCACCGCCTCGGCCTG 
GGCACCCGCGCGGTGAAGCTCGACCTCGGCGACCTCGGCAAGCTCAAGCTGCCCTGCGTGCTGCACTGGAAC 
TTCAACCACTTCGTCGTGCTCAAGGCGGTCGACGGGCGCGGCGCGGTGCTCCACGACCCCGCCCACGGCCAG 
CGCCGGCTGGGCCTGGAGGAAGTCTCGCGGAGCTTCACCGGGGTAGCCCTGGAATTCTGGCCGGAGAGCGGC 
TTCGAGAAACAGGAGGCGCCGCCGCGGATCAAGCTGCTGGGCATGCTCGGCAAGGTCACCGGGCTGTACCGC 
TCGCTGGCCCAGGTGCTGCTGCTCGCCGGCGCGCTGGAAGTGTTCTCGCTGATCAGTCCGTTCTTCCTGCAA 
TGGACCATCGACAACGTCATCGTCAGCGAAGACCGTGACCTGCTCAGCACCCTGGCCATCGGCTTCGGCCTG 
TTGCTGCTGATGCAGCAGGCGGTCAGCGGGGTGCGCGCCTGGGTGATGATGCACATGAGCACCCTGCTCGGC 
GTGCAGTGGCAGGCCAACGTCTTCAGCCACCTGCTGCGGCTGCCCGCGCAGTATTTCGAGAAGCGCCACCTG 
GGCGACGTGGTGTCGCGCTTCGGCGCGGTGAACAGCATCCAGCAGACCCTCACCGCGGCCTTCCTCTCGGCG 
GTGCTGGACGGCCTGATGACCGTCGCCACCCTCGGCATGATGCTGCTCTACAGTCCGCCGCTGGCGGCCATC 
GCCATCGCCGCCATGAGCCTCTACGCCCTCGGCCGCTGGATCTGGTACCGGCCGTTGCGCAACGCCACCGAG 
GAGCAGATCGTCCACGCCGCGCGGCAGCAGAGCCACTTCCTCGAGACGGTGCGCGGCATCCGCCCGCTGAAG 
CTGTTCCAGCGCCAGGACGAGCGCCGCTCGGTATGGCTCGGCCTGCTGGTGGAACAGATCAACGCCGGCCTG 
CGTACGCAGAAGCTGCAACTGTTCTACCAGCAGCTCAACGGCCTGCTGTTCGGCGTGGAGAACCTGCTGGTG 
ATCTGGCTCGGCGCGACCATGGTGATGGACGGTCAGTTCAGCGTCGGCATCCTGATGGCCTTCAACGCCTAC 
AAGTCGCAGTTCGACAGCCGCGTCGGCAGCCTGATCGACAAGTTCTTCGAGCTGCGCATGCTCCAGTTGCAG 
GGCGAGCGCCTGGCCGACATCGTCCTCCAGGCCCCGGAGGTCAGCCACGGCGACATCCTCCCGGAGAACCTC 
CGCGATCGCGAGGCGAGCATCGAGATCCAGGGCCTGCGCTACCGCTACGCGGAACAGGAGCCCTGGGTCCTC 
GACGGCCTCGACCTGCGCATCGCCGGCGGTGAGTCGGTGGCCATCGTCGGCCCCTCGGGCTGCGGCAAGAGC 
ACCCTGCTCAACGTCCTGCTGGGCATCCTCCCGCCAGTGGGGGGACAGATCCGCATGGCCGGCCTGGACCTT 
GCGCAACTGGGCCTGGACGGCCTGCGCGAACTGGTCGGCACGGTGCTGCAGGACGACGTGCTGTTCGCCGGT 
TCGCTCAGCGACAACATCAGTTTCTTCGACCCGCAGCCGGACATGCCCTGGCTGCTGCAGTGCGCGCAGATG 
GCTGCCATCCACGATGACATCCAGGCCATGCCGATGGGCTACAACACCCTGGTCGGCGACATGGGCACGGTG 
CTCTCCGGCGGCCAGAAGCAGCGGGTGATGCTGGCCCGGGCGCTGTACAAGAAGCCGCGCATCCTGTTCCTC 
GACGAAGCCACCAGCCACCTCGACGTACACTGCGAACAGCGGGTCAACGCCGCCATTCGCGCGCTGCGCATC 
ACCCGCATCATGGTCGCCCATCGGCCCGAGACCATCGCCTCGGCGGACCGCGTGATAGTCCTCGGCCAGGGC 
AAGGTAAGCCTCGACGAAAGCACCGCGCGCCTGGCCGAACGCCAGGCCGCCGCGGCGCGGGAGCAGGCCTGA