ViewGene
Locus Name:
GeneID:
Location:

GeneID:2877
TrivialName: PA14_42550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42550
PAO1 Ortholog Locus:PA1698
Sequence Length:867
Protein Length:288
Start: 3787576
Stop: 3786710
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05087.1|AE004597_1 (AE004597) Type III secretion outer membrane protein PopN precursor [Pseudomonas aeruginosa PAO1]
Identities = 288/288 (100%), Positives = 288/288 (100%)
Sequence:
ATGGACATCCTCCAGAGTTCCTCCGCCGCGCCCCTCGCGCCGCGGGAAGCGGCCAACGCCCCCGCGCAGCAG
GCTGGCGGCAGCTTTCAGGGCGAGCGCGTCCACTACGTTTCCGTTTCGCAGTCGCTGGCCGATGCCGCGGAA
GAGCTGACCTTCGCCTTTTCTGAGCGCGCCGAGAAATCCCTGGCCAAGCGCCGCCTGAGCGACGCCCATGCG
CGCCTGAGCGAAGTCCAGGCCATGCTGCAGGAGTACTGGAAGCGCATTCCGGACCTGGAAAGCCAGCAGAAG
CTCGAGGCGCTGATCGCCCACCTGGGCAGCGGCCAACTGAGCAGCCTGGCGCAGCTCAGTGCTTACCTGGAG
GGCTTCTCCAGCGAGATCAGCCAGCGCTTCCTGGCGCTGTCGCGGGCGCGCGACGTCCTGGCCGGGCGGCCG
GAGGCGCGGGCGATGCTGGCGCTGGTCGACCAGGCGTTGCTGCGGATGGCCGACGAGCAGGGCCTGGAGATC
GAACTCGGCCTGCGCATCGAGCCGCTGGCCGCCGAGGCTTCCGCCGCCGGTGTCGGCGATATCCAGGCGCTG
CGCGATACCTACCGTGACGCGGTACTCGACTACCGGGGCCTGTCGGCGGCCTGGCAGGACATCCAGGCGCGC
TTCGCCGCGACGCCGCTGGAGCGGGTCGTGGCCTTCCTGCAGAAAGCCCTGAGCGCCGACCTGGACAGTCAG
TCGAGCCGGCTCGATCCGGTGAAGCTGGAGCGGGTCATGAGCGACATGCACAAGCTGCGCGTGCTCGGCGGC
CTGGCGGAGCAGGTGGGGGCGCTCTGGCAGGTGCTGGTGACAGGGGAGCGGGGCCATGGCATACGGGCCTTC
TGA
Translation:
MDILQSSSAAPLAPREAANAPAQQAGGSFQGERVHYVSVSQSLADAAEELTFAFSERAEKSLAKRRLSDAHA
RLSEVQAMLQEYWKRIPDLESQQKLEALIAHLGSGQLSSLAQLSAYLEGFSSEISQRFLALSRARDVLAGRP
EARAMLALVDQALLRMADEQGLEIELGLRIEPLAAEASAAGVGDIQALRDTYRDAVLDYRGLSAAWQDIQAR
FAATPLERVVAFLQKALSADLDSQSSRLDPVKLERVMSDMHKLRVLGGLAEQVGALWQVLVTGERGHGIRAF
*
AnnotationID:2885GeneID:2877
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 06:06:34
Gene Name:popN
Confidence Code:1
GeneProduct:Type III secretion outer membrane protein PopN precursor
Cell Localization:()
Synonyms:yopN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam07201
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO18045.1| (AY144116) LopN [Photorhabdus luminescens]
          Length = 290

 Score =  329 bits (844), Expect = 1e-89
 Identities = 174/291 (59%), Positives = 221/291 (75%), Gaps = 4/291 (1%)

>emb|CAD30213.1| (AJ458292) AopN protein [Aeromonas salmonicida subsp. salmonicida]
          Length = 229

 Score =  240 bits (613), Expect = 6e-63
 Identities = 131/222 (59%), Positives = 166/222 (74%), Gaps = 5/222 (2%)

>gb|AAC69792.1| (AF074612) secretion control protein [Yersinia pestis KIM]
          Length = 293

 Score =  231 bits (590), Expect = 3e-60
 Identities = 131/276 (47%), Positives = 177/276 (64%), Gaps = 2/276 (0%)






 
Structural Features:
pfam07201, HrpJ, Hypersensitivity response secretion protein HrpJ.
CD-Length = 170 residues, 100.0% aligned
Score =  170 bits (432), Expect = 2e-43
Identities = 97/171 (56%), Positives = 120/171 (70%), Gaps = 2/171 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5757




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22900




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37199




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2877_cdd.html


    		




 
URL:

















    ReferenceID:37855




  
Author/Investigator(s):
        Forsberg A, Viitanen AM, Skurnik M, Wolf-Watz H.





  
Title:
        The surface-located YopN protein is involved in calcium signal transduction in Yersinia pseudotuberculosis.




  
PubMed:
        1857212


MedLine:
        




    
Source:
Mol Microbiol. 1991 Apr;5(4):977-86.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=91312137&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:2877
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4671
                           PA1698_tr
                           translation of PA1698
                           288
                           99.99
                           99.99
                           0
                           1402.0
     

     
     
134552
                           gb|AAG05087.1|AE004597_1
                           (AE004597) Type III secretion outer membrane protein PopN precursor [Pseudomonas aeruginosa PAO1]
                           288
                           99.99
                           99.99
                           0
                           1402.0
     

     
     
134553
                           gb|AAC45939.1|
                           (AF010150) PopN [Pseudomonas aeruginosa]
                           288
                           99.99
                           99.99
                           0
                           1402.0
     

     
     
134554
                           gb|AAO18045.1|
                           (AY144116) LopN [Photorhabdus luminescens]
                           291
                           59.79
                           75.94
                           4
                           850.0
     

     
     
134555
                           emb|CAE16138.1|
                           (BX571871) Type III secretion control protein SctW [Photorhabdus luminescens subsp. laumondii TTO1]
                           291
                           59.10
                           75.60
                           4
                           843.0
     

     






      

          
GC ORFID: 45879How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1698Glimmer Score: 

          
Start: 1166333Stop: 1167199

          
Length: 867


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1698 translation of PA1698Homolog Bit Score 544.0

          
Other Homologs:  t_PA1698 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACATCCTCCAGAGTTCCTCCGCCGCGCCCCTCGCGCCGCGGGAAGCGGCCAACGCCCCCGCGCAGCAG 
GCTGGCGGCAGCTTTCAGGGCGAGCGCGTCCACTACGTTTCCGTTTCGCAGTCGCTGGCCGATGCCGCGGAA 
GAGCTGACCTTCGCCTTTTCTGAGCGCGCCGAGAAATCCCTGGCCAAGCGCCGCCTGAGCGACGCCCATGCG 
CGCCTGAGCGAAGTCCAGGCCATGCTGCAGGAGTACTGGAAGCGCATTCCGGACCTGGAAAGCCAGCAGAAG 
CTCGAGGCGCTGATCGCCCACCTGGGCAGCGGCCAACTGAGCAGCCTGGCGCAGCTCAGTGCTTACCTGGAG 
GGCTTCTCCAGCGAGATCAGCCAGCGCTTCCTGGCGCTGTCGCGGGCGCGCGACGTCCTGGCCGGGCGGCCG 
GAGGCGCGGGCGATGCTGGCGCTGGTCGACCAGGCGTTGCTGCGGATGGCCGACGAGCAGGGCCTGGAGATC 
GAACTCGGCCTGCGCATCGAGCCGCTGGCCGCCGAGGCTTCCGCCGCCGGTGTCGGCGATATCCAGGCGCTG 
CGCGATACCTACCGTGACGCGGTACTCGACTACCGGGGCCTGTCGGCGGCCTGGCAGGACATCCAGGCGCGC 
TTCGCCGCGACGCCGCTGGAGCGGGTCGTGGCCTTCCTGCAGAAAGCCCTGAGCGCCGACCTGGACAGTCAG 
TCGAGCCGGCTCGATCCGGTGAAGCTGGAGCGGGTCATGAGCGACATGCACAAGCTGCGCGTGCTCGGCGGC 
CTGGCGGAGCAGGTGGGGGCGCTCTGGCAGGTGCTGGTGACAGGGGAGCGGGGCCATGGCATACGGGCCTTC 
TGA