ViewGene

Locus Name:
GeneID:
Location:

GeneID:2876
TrivialName: PA14_51690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51690
PAO1 Ortholog Locus:PA0974
Sequence Length:825
Protein Length:274
Start: 4593619
Stop: 4592795
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04363.1|AE004530_16 (AE004530) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 273/274 (99%), Positives = 273/274 (99%)
Sequence:
ATGCCCAAGCACCTGCGTGTCCTGACGTTCCTCGCGCTCAGCCTGCCATTCGCGGCCTGGGCGGAAGTTCCT
GTGTATGACGGCGTTGCCGCCAACAATGGCGGCAACGTTCCTCCTTCCGGGTATGGCACGGCAGGTGCCGGC
GGCGCCTTTGCCGGAGGTGGGGTGACAACCCCTACCTCCGTGCAGGGCGAACTGTTCATGCAGCTCCAGCAG
ATGCAGGACGAGTTGGCTCGCCTGCGTGGCACGCTCGAGGAACAGCAGAACCAGATCCAGCAGCTCAAGCAG
GAAAGCCTGGAACGTTACCAGGACCTCGACCGTCGGATTTCCGGTGGTGGCGCTCCCGCTGCACAGAATTCC
GCACCCGCTGGCGCCATCAACGCCAATGGGGCGCCTGCGGCTCCCGCAGGCAACAACGCACCGGCGCCGAGT
AGCGAGCCGGGCGACCCGGCGAAGGAGAAGCTCTACTACGACGCGGCCTTCGACCTGATAAAGAGCAAGGAT
TTCGACAAGGCGAGCCAGGCGTTCAATGCCTTCTTGCGCAAGTACCCGAACAGCCAGTACTCCGGCAACGCC
CAGTACTGGCTCGGCGAGGTGAACCTGGCCAAGGGCGACCTGCAAGGTGCCGGCCAGGCTTTCGCGCGGGTC
AGCCAGAGCTACCCCAGCAGCCAGAAGGTGCCCGACTCGCTGTACAAGCTGGCGGACGTCGAGCGTCGCCTG
GGTAACAACGACAAGGCCAAGGGCATCCTCCAGCAGGTCATTTCCCAGTACCCGGGCACTTCGGCCGCCCAA
CTGGCGCAGCGCGACCTGAAGAACCTTCGCTGA
Translation:
MPKHLRVLTFLALSLPFAAWAEVPVYDGVAANNGGNVPPSGYGTAGAGGAFAGGGVTTPTSVQGELFMQLQQ
MQDELARLRGTLEEQQNQIQQLKQESLERYQDLDRRISGGGAPAAQNSAPAGAINANGAPAAPAGNNAPAPS
SEPGDPAKEKLYYDAAFDLIKSKDFDKASQAFNAFLRKYPNSQYSGNAQYWLGEVNLAKGDLQGAGQAFARV
SQSYPSSQKVPDSLYKLADVERRLGNNDKAKGILQQVISQYPGTSAAQLAQRDLKNLR*
AnnotationID:2884GeneID:2876
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 13:01:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0974
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1729
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1729, Uncharacterized protein conserved in bacteria [Function unknown]
     CD-Length = 262 residues,  99.6% aligned
     Score =  211 bits (537), Expect = 9e-56
Genomic Context:
Comment:
ReferenceID:5755
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22898
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2876

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4670 PA0974_tr translation of PA0974 274 99.63 99.63 0 1401.0
134546 gb|AAG04363.1|AE004530_16 (AE004530) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 274 99.63 99.63 0 1401.0
134547 gb|AAD52665.1|AF177774_2 (AF177774) periplasmic protein [Pseudomonas aeruginosa] 274 99.63 99.63 0 1401.0
134548 gb|AAN66848.1|AE016313_7 (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440] 278 71.58 80.93 14 984.0
134549 emb|CAA52295.1| (X74218) hypothetical protein [Pseudomonas putida] 278 71.58 80.93 14 984.0
GC ORFID: 45878How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0974Glimmer Score:
Start: 360288Stop: 361112
Length: 825
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0974 translation of PA0974Homolog Bit Score 544.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4695 (ORF: BLASTX 384.0), t_PA0974 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCAAGCACCTGCGTGTCCTGACGTTCCTCGCGCTCAGCCTGCCATTCGCGGCCTGGGCGGAAGTTCCT
GTGTATGACGGCGTTGCCGCCAACAATGGCGGCAACGTTCCTCCTTCCGGGTATGGCACGGCAGGTGCCGGC
GGCGCCTTTGCCGGAGGTGGGGTGACAACCCCTACCTCCGTGCAGGGCGAACTGTTCATGCAGCTCCAGCAG
ATGCAGGACGAGTTGGCTCGCCTGCGTGGCACGCTCGAGGAACAGCAGAACCAGATCCAGCAGCTCAAGCAG
GAAAGCCTGGAACGTTACCAGGACCTCGACCGTCGGATTTCCGGTGGTGGCGCTCCCGCTGCACAGAATTCC
GCACCCGCTGGCGCCATCAACGCCAATGGGGCGCCTGCGGCTCCCGCAGGCAACAACGCACCGGCGCCGAGT
AGCGAGCCGGGCGACCCGGCGAAGGAGAAGCTCTACTACGACGCGGCCTTCGACCTGATAAAGAGCAAGGAT
TTCGACAAGGCGAGCCAGGCGTTCAATGCCTTCTTGCGCAAGTACCCGAACAGCCAGTACTCCGGCAACGCC
CAGTACTGGCTCGGCGAGGTGAACCTGGCCAAGGGCGACCTGCAAGGTGCCGGCCAGGCTTTCGCGCGGGTC
AGCCAGAGCTACCCCAGCAGCCAGAAGGTGCCCGACTCGCTGTACAAGCTGGCGGACGTCGAGCGTCGCCTG
GGTAACAACGACAAGGCCAAGGGCATCCTCCAGCAGGTCATTTCCCAGTACCCGGGCACTTCGGCCGCCCAA
CTGGCGCAGCGCGACCTGAAGAACCTTCGCTGA