ViewGene
Locus Name:
GeneID:
Location:

GeneID:2875
TrivialName: PA14_72580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72580
PAO1 Ortholog Locus:PA5500
Sequence Length:810
Protein Length:269
Start: 6465920
Stop: 6466729
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08885.1|AE004962_9 (AE004962) zinc transport protein ZnuC [Pseudomonas aeruginosa PAO1]
Identities = 269/269 (100%), Positives = 269/269 (100%)
Sequence:
ATGGACAACGCGCTGGTGCGGCTGACCCAGGTCGGCGTGTCCTTCAACGGCCAGGCGGTGCTGAGCGATGTC
GACCTGGCCATCGAGCCCGGCCAGATCGTCACCCTGATCGGCCCCAACGGCGCCGGCAAGACCACCCTGGTA
CGCAGCGTGCTCGGCCTGCTCAAGCCGCACGTCGGCGAGGTCTGGCGACGGCCGCGGCTGACCATCGGCTAC
ATGCCGCAGAAACTCCACGTCGACGCCACCCTGCCGCTCAGCGTACTGCGCTTCCTCCGCCTGGTACCCGGG
GTCAAGCGCGAGCAGGCGCTGGCGGCGTTGCGCGAGGTCGGCGCGGCGCACGTGCTGGAGCGCCCGCTGCAA
AGCATTTCCGGTGGCGAACTGCAACGCGTGCTGCTGGCCCGCGCCCTGCTGCGCAAGCCCGAGCTGCTGGTG
CTCGACGAGCCGGTGCAGGGCGTCGACGTCGCCGGCCAGGCCGAACTCTACCGCCTCATCGGCAAACTGCGC
GACCGCTACGGCTGCGGTGTGCTGATGGTCTCCCACGACCTGCACCTGGTGATGAGCGCCACCGACCAGGTG
GTCTGCCTGAACCGCCATGTCTGCTGCTCCGGGCACCCCGAGCAGGTCAGCGGCGACCCGGCCTTCGTCGAG
CTGTTCGGCCAGGACGCTCGCAGCCTGGCGATCTACCACCACCATCACGACCACGCCCACGACCTCCACGGC
GAGGTGGTCAAGGCCGGTCCCGGCGCCTTGCCTCCAGGCACCCGCTTCACTCCTGTCCACAAGCACGGCCCC
GACTGCAACCATGGCTGA
Translation:
MDNALVRLTQVGVSFNGQAVLSDVDLAIEPGQIVTLIGPNGAGKTTLVRSVLGLLKPHVGEVWRRPRLTIGY
MPQKLHVDATLPLSVLRFLRLVPGVKREQALAALREVGAAHVLERPLQSISGGELQRVLLARALLRKPELLV
LDEPVQGVDVAGQAELYRLIGKLRDRYGCGVLMVSHDLHLVMSATDQVVCLNRHVCCSGHPEQVSGDPAFVE
LFGQDARSLAIYHHHHDHAHDLHGEVVKAGPGALPPGTRFTPVHKHGPDCNHG*
AnnotationID:2883GeneID:2875
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:55
Gene Name:znuC
Confidence Code:2
GeneProduct:zinc ABC transporter, ATP-binding protein ZnuC
Cell Localization:()
Synonyms:yebM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:high-affinity zinc uptake system ATP-binding protein
Functional Category Confidence Code:5
COGs:COG1121
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65752.1|AE016201_4 (AE016774) zinc ABC transporter, ATP-binding protein ZnuC
           [Pseudomonas putida KT2440]
          Length = 257

 Score =  415 bits (1067), Expect = e-115
 Identities = 205/269 (76%), Positives = 230/269 (85%), Gaps = 12/269 (4%)

>gb|AAO58692.1| (AE016875) zinc ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 264

 Score =  411 bits (1057), Expect = e-114
 Identities = 204/269 (75%), Positives = 226/269 (84%), Gaps = 5/269 (1%)

>gb|AAN80729.1|AE016761_304 (AE016761) High-affinity zinc uptake system ATP-binding protein
           znuC [Escherichia coli CFT073]
          Length = 251

 Score =  295 bits (754), Expect = 2e-79
 Identities = 147/241 (60%), Positives = 180/241 (74%), Gaps = 1/241 (0%)








 
Structural Features:
COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 254 residues, 100.0% aligned
Score =  270 bits (692), Expect = 1e-73
Identities = 116/255 (45%), Positives = 159/255 (62%), Gaps = 21/255 (8%)








   
Genomic Context:






   
Comment:


















    ReferenceID:5753




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22896




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33257




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2875_cdd.html


    		




 
URL:

















    ReferenceID:35594




  
Author/Investigator(s):
        Chen CY, Morse SA.





  
Title:
        Identification and characterization of a high-affinity zinc uptake system in Neisseria gonorrhoeae.




  
PubMed:
        11506909


MedLine:
        




    
Source:
FEMS Microbiol Lett. 2001 Aug 7;202(1):67-71.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11506909









           
Homologs By Global Alignment 

           

       



     
Gene ID:2875
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4669
                           PA5500_tr
                           translation of PA5500
                           269
                           99.99
                           99.99
                           0
                           1405.0
     

     
     
134514
                           gb|AAG08885.1|AE004962_9
                           (AE004962) zinc transport protein ZnuC [Pseudomonas aeruginosa PAO1]
                           269
                           99.99
                           99.99
                           0
                           1405.0
     

     
     
134515
                           gb|AAN65752.1|AE016201_4
                           (AE016774) zinc ABC transporter, ATP-binding protein ZnuC [Pseudomonas putida KT2440]
                           269
                           76.20
                           85.50
                           12
                           1076.0
     

     
     
134516
                           gb|AAO58692.1|
                           (AE016875) zinc ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           269
                           75.83
                           84.01
                           5
                           1061.0
     

     
     
134517
                           gb|AAM85810.1|AE013828_1
                           (AE013828) ATP-binding component of zinc ABC transport system [Yersinia pestis KIM]
                           270
                           55.18
                           70.74
                           18
                           780.0
     

     






      

          
GC ORFID: 45877How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5500Glimmer Score: 

          
Start: 5729609Stop: 5730418

          
Length: 810


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5500 translation of PA5500Homolog Bit Score 545.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6733 (ORF: BLASTX 409.0), t_PA5500 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAACGCGCTGGTGCGGCTGACCCAGGTCGGCGTGTCCTTCAACGGCCAGGCGGTGCTGAGCGATGTC 
GACCTGGCCATCGAGCCCGGCCAGATCGTCACCCTGATCGGCCCCAACGGCGCCGGCAAGACCACCCTGGTA 
CGCAGCGTGCTCGGCCTGCTCAAGCCGCACGTCGGCGAGGTCTGGCGACGGCCGCGGCTGACCATCGGCTAC 
ATGCCGCAGAAACTCCACGTCGACGCCACCCTGCCGCTCAGCGTACTGCGCTTCCTCCGCCTGGTACCCGGG 
GTCAAGCGCGAGCAGGCGCTGGCGGCGTTGCGCGAGGTCGGCGCGGCGCACGTGCTGGAGCGCCCGCTGCAA 
AGCATTTCCGGTGGCGAACTGCAACGCGTGCTGCTGGCCCGCGCCCTGCTGCGCAAGCCCGAGCTGCTGGTG 
CTCGACGAGCCGGTGCAGGGCGTCGACGTCGCCGGCCAGGCCGAACTCTACCGCCTCATCGGCAAACTGCGC 
GACCGCTACGGCTGCGGTGTGCTGATGGTCTCCCACGACCTGCACCTGGTGATGAGCGCCACCGACCAGGTG 
GTCTGCCTGAACCGCCATGTCTGCTGCTCCGGGCACCCCGAGCAGGTCAGCGGCGACCCGGCCTTCGTCGAG 
CTGTTCGGCCAGGACGCTCGCAGCCTGGCGATCTACCACCACCATCACGACCACGCCCACGACCTCCACGGC 
GAGGTGGTCAAGGCCGGTCCCGGCGCCTTGCCTCCAGGCACCCGCTTCACTCCTGTCCACAAGCACGGCCCC 
GACTGCAACCATGGCTGA