ViewGene
Locus Name:
GeneID:
Location:

GeneID:2874
TrivialName: PA14_68430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68430
PAO1 Ortholog Locus:PA5180
Sequence Length:840
Protein Length:279
Start: 6104117
Stop: 6104956
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08565.1|AE004931_2 (AE004931) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 269/279 (96%), Positives = 276/279 (98%)
Sequence:
ATGCCTTGCCAGCCTGCATGCCCGGTATCCGCCGATACCTGGGCGCCTTCCGCCGTTCCCGACGTTTACCGC
TACGCCGACCTGCACCTGCCGCAGCAGATCGGCCAGGCCTCCCTTGCCGCCGAGTGCGCCCTGGCGATCAGT
TACAACGGACTGAACCAGGCGGTGATGATGGCCTCGCCCGAGGACATCGAGGATTTCGTCCGCGGCTTCAGC
CTCAGCAGTGGCTTCGTACAGGCCATCGACGAAATCTATGAAATCCGCGTCAGCGGCCAGGGCGAATCCCTC
CACGCCGAgGTCGAGATCAGCAGCCGCGCATTCTGGAACCTCAAGCGCCAGCGCCGGCAACTGGCCGGCACG
TCAGGCTGCGGCCTGTGCGGCGTCGAAGCCCTGGAGCAGGCGCTGCCGCAACTGCCGGAGCGGTCGTCGCAG
GCGCTGCCTCCCGCCGCCCATCTCGGCGCCCTGCGCCAGCGTATCGAGCAGGCCCAGCGACTGGCGCGCCAT
AGCGGCGCCCTGCATGCCGCGCTGTATTTCGACGGGCATGGCGAGCTGCGCCTGTGTCGCGAGGACATCGGC
CGCCACAACGCCCTCGACAAGCTGATCGGCGCCCTGCATGGACAGGGACTGGATGCTGCGCAGGGCTTCGCC
GTGGTCACCAGCCGCTGCAGCCTGGAGCTTATCCACAAGGCCGTACGCGCCGGGATCGGCACCCTGGTCAGC
CTCTCCGCGCCAACCGCCCTGACCGTGCAATGGGCGCGCCGCCACCAGCTGAACCTGATCCACCAGCCCCAT
CACAGTGCCCCGCGGGTCTACAGCCCGGCGCCGGCCGCAACCGAGTGA
Translation:
MPCQPACPVSADTWAPSAVPDVYRYADLHLPQQIGQASLAAECALAISYNGLNQAVMMASPEDIEDFVRGFS
LSSGFVQAIDEIYEIRVSGQGESLHAEVEISSRAFWNLKRQRRQLAGTSGCGLCGVEALEQALPQLPERSSQ
ALPPAAHLGALRQRIEQAQRLARHSGALHAALYFDGHGELRLCREDIGRHNALDKLIGALHGQGLDAAQGFA
VVTSRCSLELIHKAVRAGIGTLVSLSAPTALTVQWARRHQLNLIHQPHHSAPRVYSPAPAATE*
AnnotationID:2882GeneID:2874
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 16:04:50
Gene Name:
Confidence Code:3
GeneProduct:putative formate dehydrogenase accessory protein FdhD
Cell Localization:()
Synonyms:fdhD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative formate dehydrogenase oxidoreductase protein
Functional Category Confidence Code:5
COGs:pfam02634
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65888.1|AE016216_9 (AE016775) formate dehydrogenase accessory protein FdhD
           [Pseudomonas putida KT2440]
          Length = 276

 Score =  322 bits (824), Expect = 2e-87
 Identities = 170/270 (62%), Positives = 197/270 (72%), Gaps = 2/270 (0%)

>gb|AAO58828.1| (AE016875) formate dehydrogenase accessory protein FdhD
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 278

 Score =  315 bits (807), Expect = 2e-85
 Identities = 168/267 (62%), Positives = 200/267 (74%), Gaps = 4/267 (1%)

>dbj|BAC62305.1| (AP005087) putative formate dehydrogenase oxidoreductase protein
           [Vibrio parahaemolyticus]
          Length = 276

 Score =  306 bits (783), Expect = 1e-82
 Identities = 156/256 (60%), Positives = 189/256 (73%)






 
Structural Features:
pfam02634, FdhD-NarQ, FdhD/NarQ family. Nitrate assimilation protein, NarQ, and FdhD 
are required for formate dehydrogenase activity.
CD-Length = 244 residues,  93.0% aligned
Score =  177 bits (451), Expect = 1e-45
Identities = 81/229 (35%), Positives = 127/229 (55%), Gaps = 2/229 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5751




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22894




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34895




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2874_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2874
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4668
                           PA5180_tr
                           translation of PA5180
                           279
                           96.41
                           98.92
                           0
                           1403.0
     

     
     
134502
                           gb|AAG08565.1|AE004931_2
                           (AE004931) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           279
                           96.41
                           98.92
                           0
                           1403.0
     

     
     
134503
                           gb|AAN65888.1|AE016216_9
                           (AE016775) formate dehydrogenase accessory protein FdhD [Pseudomonas putida KT2440]
                           282
                           60.63
                           70.56
                           9
                           822.0
     

     
     
134504
                           gb|AAO58828.1|
                           (AE016875) formate dehydrogenase accessory protein FdhD [Pseudomonas syringae pv. tomato str. DC3000]
                           282
                           59.57
                           71.27
                           7
                           798.0
     

     
     
134505
                           dbj|BAC62305.1|
                           (AP005087) putative formate dehydrogenase oxidoreductase protein [Vibrio parahaemolyticus]
                           282
                           58.15
                           70.92
                           9
                           782.0
     

     






      

          
GC ORFID: 45876How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5180Glimmer Score: 

          
Start: 5367803Stop: 5368642

          
Length: 840


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5180 translation of PA5180Homolog Bit Score 545.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2294 (ORF: BLASTX 313.0), t_PA5180 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTTGCCAGCCTGCATGCCCGGTATCCGCCGATACCTGGGCGCCTTCCGCCGTTCCCGACGTTTACCGC 
TACGCCGACCTGCACCTGCCGCAGCAGATCGGCCAGGCCTCCCTTGCCGCCGAGTGCGCCCTGGCGATCAGT 
TACAACGGACTGAACCAGGCGGTGATGATGGCCTCGCCCGAGGACATCGAGGATTTCGTCCGCGGCTTCAGC 
CTCAGCAGTGGCTTCGTACAGGCCATCGACGAAATCTATGAAATCCGCGTCAGCGGCCAGGGCGAATCCCTC 
CACGCCGAgGTCGAGATCAGCAGCCGCGCATTCTGGAACCTCAAGCGCCAGCGCCGGCAACTGGCCGGCACG 
TCAGGCTGCGGCCTGTGCGGCGTCGAAGCCCTGGAGCAGGCGCTGCCGCAACTGCCGGAGCGGTCGTCGCAG 
GCGCTGCCTCCCGCCGCCCATCTCGGCGCCCTGCGCCAGCGTATCGAGCAGGCCCAGCGACTGGCGCGCCAT 
AGCGGCGCCCTGCATGCCGCGCTGTATTTCGACGGGCATGGCGAGCTGCGCCTGTGTCGCGAGGACATCGGC 
CGCCACAACGCCCTCGACAAGCTGATCGGCGCCCTGCATGGACAGGGACTGGATGCTGCGCAGGGCTTCGCC 
GTGGTCACCAGCCGCTGCAGCCTGGAGCTTATCCACAAGGCCGTACGCGCCGGGATCGGCACCCTGGTCAGC 
CTCTCCGCGCCAACCGCCCTGACCGTGCAATGGGCGCGCCGCCACCAGCTGAACCTGATCCACCAGCCCCAT 
CACAGTGCCCCGCGGGTCTACAGCCCGGCGCCGGCCGCAACCGAGTGA