ViewGene
Locus Name:
GeneID:
Location:

GeneID:2873
TrivialName: PA14_67280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67280
PAO1 Ortholog Locus:PA5095
Sequence Length:852
Protein Length:283
Start: 6009579
Stop: 6008728
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08480.1|AE004922_5 (AE004922) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 282/283 (99%), Positives = 283/283 (100%)
Sequence:
ATGTTTCCCGAACGCCTGACATTTTCCATCGCCGACTGGGTCAACGCTTGGGTCGACGCCCTGGTGACCAAC
TACGGCGACCTGTTCCGCAAGATCTCCGACACCCTGCTGTGGGCTATCGTCAACCTCGAAGGGCTGCTCCGC
GCCACGCCCTGGTGGCTATTGCTGGCGATCGTCGCGGCGATCGCCTGGCACGCCACCCGGCGCCTGCTGCCG
ACCCTGGTGATCACCGGCCTGCTGTTCCTGGTCGGCGCCGTCGGCCTCTGGGACAAGCTGATGCAGACCCTC
GCGCTGATGCTGGTGGCGACCTTCATCTCGGTGCTGATCGGCATCCCCCTGGGCATCCTCGCCGCGCGCAGC
AACCGCCTGCGCGCGGTACTGATGCCGCTGCTGGACATCATGCAGACCATGCCCAGCTTCGTGTACCTGATC
CCGGTGCTGATGCTGTTCGGCCTGGGCAAGGTGCCGGCGATCTTCGCCACCGTGATCTATGCCGCGCCGCCG
CTGATCCGCCTCACCGACCTGGGCATCCGCCAGGTCGACAGCGAGGTGATGGAGGCGGTCAACGCCTTCGGC
GCCAACCGCTGGCAGCAGCTGTTCGGCGTGCAGTTGCCGCTGGCCCTGCCGAGCATCATGGCGGGGATCAAC
CAGACCACCATGATGGCCCTGTCGATGGTGGTGATCGCTTCGATGATCGGCGCCCGCGGCCTCGGCGAAGAC
GTACTGGTGGGCATCCAGACGCTGAACGTGGGCAAGGGCCTGGAAGCCGGCCTGGCGATCGTCATCCTCGCG
GTGGTGATCGACCGCATCACCCAGGCCTACGGCCGTTCCCGGCACGAGACGAGCAAATGA
Translation:
MFPERLTFSIADWVNAWVDALVTNYGDLFRKISDTLLWAIVNLEGLLRATPWWLLLAIVAAIAWHATRRLLP
TLVITGLLFLVGAVGLWDKLMQTLALMLVATFISVLIGIPLGILAARSNRLRAVLMPLLDIMQTMPSFVYLI
PVLMLFGLGKVPAIFATVIYAAPPLIRLTDLGIRQVDSEVMEAVNAFGANRWQQLFGVQLPLALPSIMAGIN
QTTMMALSMVVIASMIGARGLGEDVLVGIQTLNVGKGLEAGLAIVILAVVIDRITQAYGRSRHETSK*
AnnotationID:2881GeneID:2873
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 17:05:28
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid transporter permease protein
Cell Localization:()
Synonyms:PA5095, proW
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4176,COG1174,COG0600
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58698.1| (AE016875) histidine ABC transporter, permease protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 283

 Score =  492 bits (1267), Expect = e-139
 Identities = 251/283 (88%), Positives = 265/283 (93%)

>gb|AAN69160.1|AE016550_2 (AE016787) amino acid transporter permease protein, putative
           [Pseudomonas putida KT2440]
          Length = 299

 Score =  369 bits (948), Expect = e-102
 Identities = 183/276 (66%), Positives = 226/276 (81%)

>emb|CAC47280.1| (AL591791) HISTIDINE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER
           PROTEIN [Sinorhizobium meliloti]
          Length = 285

 Score =  361 bits (927), Expect = 2e-99
 Identities = 183/283 (64%), Positives = 226/283 (79%)






 
Structural Features:
COG4176, ProW, ABC-type proline/glycine betaine transport system, 
permease component 
[Amino acid transport and metabolism]
CD-Length = 290 residues,  92.8% aligned
Score =  337 bits (867), Expect = 7e-94
Identities = 167/270 (61%), Positives = 209/270 (77%), Gaps = 1/270 (0%)

COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, 
permease component 
[Amino acid transport and metabolism]
CD-Length = 221 residues,  88.7% aligned
Score =  136 bits (343), Expect = 4e-33
Identities = 71/196 (36%), Positives = 113/196 (57%)

COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, 
permease component 
[Inorganic ion transport and metabolism]
CD-Length = 258 residues,  96.1% aligned
Score = 97.6 bits (243), Expect = 2e-21
Identities = 74/248 (29%), Positives = 122/248 (49%), Gaps = 9/248 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5749




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22892




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34975




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2873_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2873
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4666
                           PA5095_tr
                           translation of PA5095
                           283
                           99.64
                           99.99
                           0
                           1403.0
     

     
     
134407
                           gb|AAG08480.1|AE004922_5
                           (AE004922) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           283
                           99.64
                           99.99
                           0
                           1403.0
     

     
     
134408
                           gb|AAO58698.1|
                           (AE016875) histidine ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           283
                           88.69
                           93.63
                           0
                           1267.0
     

     
     
134410
                           emb|CAC47280.1|
                           (AL591791) HISTIDINE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti]
                           285
                           64.21
                           79.29
                           2
                           927.0
     

     
     
134411
                           gb|AAF78098.1|AF111939_2
                           (AF111939) inner membrane protein [Sinorhizobium meliloti]
                           285
                           63.50
                           78.94
                           2
                           911.0
     

     






      

          
GC ORFID: 45875How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5095Glimmer Score: 

          
Start: 5273264Stop: 5272413

          
Length: 852


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5095 translation of PA5095Homolog Bit Score 545.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6900 (ORF: BLASTX 493.0), t_PA5377 (ORF: BLASTX 213.0), t_PA5095 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTCCCGAACGCCTGACATTTTCCATCGCCGACTGGGTCAACGCTTGGGTCGACGCCCTGGTGACCAAC 
TACGGCGACCTGTTCCGCAAGATCTCCGACACCCTGCTGTGGGCTATCGTCAACCTCGAAGGGCTGCTCCGC 
GCCACGCCCTGGTGGCTATTGCTGGCGATCGTCGCGGCGATCGCCTGGCACGCCACCCGGCGCCTGCTGCCG 
ACCCTGGTGATCACCGGCCTGCTGTTCCTGGTCGGCGCCGTCGGCCTCTGGGACAAGCTGATGCAGACCCTC 
GCGCTGATGCTGGTGGCGACCTTCATCTCGGTGCTGATCGGCATCCCCCTGGGCATCCTCGCCGCGCGCAGC 
AACCGCCTGCGCGCGGTACTGATGCCGCTGCTGGACATCATGCAGACCATGCCCAGCTTCGTGTACCTGATC 
CCGGTGCTGATGCTGTTCGGCCTGGGCAAGGTGCCGGCGATCTTCGCCACCGTGATCTATGCCGCGCCGCCG 
CTGATCCGCCTCACCGACCTGGGCATCCGCCAGGTCGACAGCGAGGTGATGGAGGCGGTCAACGCCTTCGGC 
GCCAACCGCTGGCAGCAGCTGTTCGGCGTGCAGTTGCCGCTGGCCCTGCCGAGCATCATGGCGGGGATCAAC 
CAGACCACCATGATGGCCCTGTCGATGGTGGTGATCGCTTCGATGATCGGCGCCCGCGGCCTCGGCGAAGAC 
GTACTGGTGGGCATCCAGACGCTGAACGTGGGCAAGGGCCTGGAAGCCGGCCTGGCGATCGTCATCCTCGCG 
GTGGTGATCGACCGCATCACCCAGGCCTACGGCCGTTCCCGGCACGAGACGAGCAAATGA