ViewGene
Locus Name:
GeneID:
Location:

GeneID:2872
TrivialName: PA14_60660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60660
PAO1 Ortholog Locus:PA4584
Sequence Length:813
Protein Length:270
Start: 5406347
Stop: 5407159
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07972.1|AE004872_3 (AE004872) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 267/270 (98%), Positives = 268/270 (99%)
Sequence:
ATGAACAGGGAAGAACGCCATCCGCTCCCCGCCGCCATGCGCGAGCGGGTACTGGATGAGCTGGAACGGATC
GAACGCGAGCACGACGTAGTCGTGCTCTACGCCTGCGAGTCGGGCAGCCGGGCCTGGGGCTTCGCTTCGCCG
GACAGCGACTATGACGTACGCTTCGTCTATGTGCATCAGCCCGAGTGGTATCAGCGCGTCGAGGAACCTCGC
GACGTGATAGAACGCCCGCTGAGCGACGAGCTGGACATCAGCGGCTGGGAGCTGCGCAAGGCGTTGCGCCTG
ATGCGCAAATCCAACCCGGCCCTGCTGGAGTGGCTCGGCTCGCCGCTGGTGTATCGGGAAGAGCCTGGCGTG
CGCGAGGAACTGCTCTGGCTGGGCAACGCCTTTCACTCCGTACCTGGCAGCCGCCATCACTACCTGTCGATG
GCACGCAAGAACTACCGCGGCTACCTGAAGGGCGACAGCGTCCGGCTGAAGAAATACCTCTACGTCCTGCGC
CCGTTGTTTGCGGTGCGTTGGCTGGATGCAGGCCTGGGCTTGCCGCCGGTGGCGCTCGAGAGGCTAGTGGAA
GCCACACTGGACGACCCGTCGCTGCGCGAAGAGCTGGATGCCCTGCTGAGCCTCAAGCGTCAGCGCGACGAA
TCGGCCTACGGCCCTCCGCGCCTGGCGCTGCAACGCTTCATCGAAGCGGAGTTGCTCCAGGCCGAACGAGGG
GCCGCCCAACCAACCGGCGCGCGCCAGGACAGCCGACTGCTGGATCGCTACCTCCACGACAAGATATGGCAA
TACACAAGGGAAACCTCATGA
Translation:
MNREERHPLPAAMRERVLDELERIEREHDVVVLYACESGSRAWGFASPDSDYDVRFVYVHQPEWYQRVEEPR
DVIERPLSDELDISGWELRKALRLMRKSNPALLEWLGSPLVYREEPGVREELLWLGNAFHSVPGSRHHYLSM
ARKNYRGYLKGDSVRLKKYLYVLRPLFAVRWLDAGLGLPPVALERLVEATLDDPSLREELDALLSLKRQRDE
SAYGPPRLALQRFIEAELLQAERGAAQPTGARQDSRLLDRYLHDKIWQYTRETS*
AnnotationID:2880GeneID:2872
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 05:05:05
Gene Name:
Confidence Code:3
GeneProduct:putative nucleotidyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3541
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3541, Predicted nucleotidyltransferase 
CD-Length = 248 residues, 100.0% aligned
Score =  291 bits (747), Expect = 9e-80
Identities = 102/248 (41%), Positives = 132/248 (53%), Gaps = 1/248 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5747




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22890




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31634




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2872_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2872
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4665
                           PA4584_tr
                           translation of PA4584
                           270
                           98.88
                           99.25
                           0
                           1404.0
     

     
     
134398
                           gb|AAG07972.1|AE004872_3
                           (AE004872) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           270
                           98.88
                           99.25
                           0
                           1404.0
     

     
     
134399
                           gb|AAQ58713.1|
                           (AE016913) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           279
                           53.40
                           65.23
                           13
                           713.0
     

     
     
134400
                           emb|CAD13753.1|
                           (AL646058) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           285
                           49.82
                           62.10
                           19
                           707.0
     

     
     
134402
                           gb|AAP24394.1|
                           (AE017025) conserved hypothetical protein [Bacillus anthracis str. Ames]
                           274
                           43.43
                           61.31
                           18
                           583.0
     

     






      

          
GC ORFID: 45874How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4584Glimmer Score: 

          
Start: 4670027Stop: 4670839

          
Length: 813


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4584 translation of PA4584Homolog Bit Score 545.0

          
Other Homologs:  t_PA4584 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGGGAAGAACGCCATCCGCTCCCCGCCGCCATGCGCGAGCGGGTACTGGATGAGCTGGAACGGATC 
GAACGCGAGCACGACGTAGTCGTGCTCTACGCCTGCGAGTCGGGCAGCCGGGCCTGGGGCTTCGCTTCGCCG 
GACAGCGACTATGACGTACGCTTCGTCTATGTGCATCAGCCCGAGTGGTATCAGCGCGTCGAGGAACCTCGC 
GACGTGATAGAACGCCCGCTGAGCGACGAGCTGGACATCAGCGGCTGGGAGCTGCGCAAGGCGTTGCGCCTG 
ATGCGCAAATCCAACCCGGCCCTGCTGGAGTGGCTCGGCTCGCCGCTGGTGTATCGGGAAGAGCCTGGCGTG 
CGCGAGGAACTGCTCTGGCTGGGCAACGCCTTTCACTCCGTACCTGGCAGCCGCCATCACTACCTGTCGATG 
GCACGCAAGAACTACCGCGGCTACCTGAAGGGCGACAGCGTCCGGCTGAAGAAATACCTCTACGTCCTGCGC 
CCGTTGTTTGCGGTGCGTTGGCTGGATGCAGGCCTGGGCTTGCCGCCGGTGGCGCTCGAGAGGCTAGTGGAA 
GCCACACTGGACGACCCGTCGCTGCGCGAAGAGCTGGATGCCCTGCTGAGCCTCAAGCGTCAGCGCGACGAA 
TCGGCCTACGGCCCTCCGCGCCTGGCGCTGCAACGCTTCATCGAAGCGGAGTTGCTCCAGGCCGAACGAGGG 
GCCGCCCAACCAACCGGCGCGCGCCAGGACAGCCGACTGCTGGATCGCTACCTCCACGACAAGATATGGCAA 
TACACAAGGGAAACCTCATGA