ViewGene

Locus Name:
GeneID:
Location:

GeneID:2870
TrivialName: PA14_56590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56590
PAO1 Ortholog Locus:PA4352
Sequence Length:861
Protein Length:286
Start: 5044728
Stop: 5043868
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07740.1|AE004851_8 (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 286/286 (100%), Positives = 286/286 (100%)
Sequence:
ATGAAACGAATCCTGGTGGCGACCGACCTGTCCTCGCGTTCTGAGCTGGCGGTCATGCGCGCCGCGGCGCTG
GCCAAGGCGAGGAATGCCGAACTGACCGTGCTGAACGTGCTCGACGACGACCAGCCGCCGGTGCTGATCGCG
CCGCAACGGCTGGCCATCGCCAACCTGCTGGAAGTGAACGGACAGGCCCTGAAGGAGCGCCTCGGCGTCGAG
TCCAAGGCGATCGTGCGGGTCGGCGATCCGGTGGTGGTGATCAACGCGGTGGCCGAGGAGATCGGCGCCGAC
CTGCTGGTGATGGGCGCGCACCGGCACACGCCGCTGCGCGATCTGTTCATCGGCACCACCCTGGAGCGGGTG
GTACGCAATGCGAAGATCCCGGTGCTGCGCGCGGCCGGTGCGCCGGAAGAGGAGTACCGCCGGGTGCTGCTG
GCGCTGGACTTCTCGCCGACCTCGACGCGCGCGGTGCAGATGGCCGGCCAGCTCGGCTTCCTCGACGCCGCC
AGCCTCACCGCGCTGCATGCCTTCGAGCCGTTCGCCAAGGGCATGATGCGTTATTCGGGGATCAAGGAAGAC
CGCGTCGAGCATTACGTCGACCAGGAGGAACTCAAGGCCAACGTCGAGCTGCGCGACTACGTCGCCGGCCTG
GGGCTGGGCCGCGAGGACATCCAGTTGCGCGTCGGCGAAGGCTTGCCGATCAACGTGATCATGACCGAGGTA
CGCCGCCAGGCGCCGCAGTTGACGGTGCTCGGCACCCAGGGCCTGACCGGCTTCCGCCGCGCGCTGATCGGC
AGCGTGGCCGAGGCGGCCCTCGGCGACCTGCCATGTGACGTGCTGGCGGTGCCGCCCAAGCGCGACTAG
Translation:
MKRILVATDLSSRSELAVMRAAALAKARNAELTVLNVLDDDQPPVLIAPQRLAIANLLEVNGQALKERLGVE
SKAIVRVGDPVVVINAVAEEIGADLLVMGAHRHTPLRDLFIGTTLERVVRNAKIPVLRAAGAPEEEYRRVLL
ALDFSPTSTRAVQMAGQLGFLDAASLTALHAFEPFAKGMMRYSGIKEDRVEHYVDQEELKANVELRDYVAGL
GLGREDIQLRVGEGLPINVIMTEVRRQAPQLTVLGTQGLTGFRRALIGSVAEAALGDLPCDVLAVPPKRD*
AnnotationID:2878GeneID:2870
AnnotatorUID: diggins
Modification Date/Time: 2005-05-01 08:08:00
Gene Name:
Confidence Code:3
GeneProduct:putative universal stress protein
Cell Localization:()
Synonyms:PA4352
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00582,COG0589
Secondary Functional Category(ies):signal trandsuction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam00582, Usp, Universal stress protein family
CD-Length = 139 residues,  96.4% aligned
Score = 82.9 bits (204), Expect = 7e-17
Identities = 54/135 (40%), Positives = 69/135 (51%), Gaps = 8/135 (5%)

COG0589, UspA, Universal stress protein UspA and related 
nucleotide-binding proteins 
[Signal transduction mechanisms]
CD-Length = 154 residues,  93.5% aligned
Score = 70.8 bits (172), Expect = 3e-13
Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Genomic Context:
Comment:
ReferenceID:5743
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17107
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2870_cdd.html
URL:
ReferenceID:22886
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2870

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4663 PA4352_tr translation of PA4352 286 99.99 99.99 0 1405.0
134314 gb|AAG07740.1|AE004851_8 (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 286 99.99 99.99 0 1405.0
GC ORFID: 45872How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4352Glimmer Score:
Start: 4308404Stop: 4307544
Length: 861
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4352 translation of PA4352Homolog Bit Score 545.0
Other Homologs: t_PA4352 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACGAATCCTGGTGGCGACCGACCTGTCCTCGCGTTCTGAGCTGGCGGTCATGCGCGCCGCGGCGCTG
GCCAAGGCGAGGAATGCCGAACTGACCGTGCTGAACGTGCTCGACGACGACCAGCCGCCGGTGCTGATCGCG
CCGCAACGGCTGGCCATCGCCAACCTGCTGGAAGTGAACGGACAGGCCCTGAAGGAGCGCCTCGGCGTCGAG
TCCAAGGCGATCGTGCGGGTCGGCGATCCGGTGGTGGTGATCAACGCGGTGGCCGAGGAGATCGGCGCCGAC
CTGCTGGTGATGGGCGCGCACCGGCACACGCCGCTGCGCGATCTGTTCATCGGCACCACCCTGGAGCGGGTG
GTACGCAATGCGAAGATCCCGGTGCTGCGCGCGGCCGGTGCGCCGGAAGAGGAGTACCGCCGGGTGCTGCTG
GCGCTGGACTTCTCGCCGACCTCGACGCGCGCGGTGCAGATGGCCGGCCAGCTCGGCTTCCTCGACGCCGCC
AGCCTCACCGCGCTGCATGCCTTCGAGCCGTTCGCCAAGGGCATGATGCGTTATTCGGGGATCAAGGAAGAC
CGCGTCGAGCATTACGTCGACCAGGAGGAACTCAAGGCCAACGTCGAGCTGCGCGACTACGTCGCCGGCCTG
GGGCTGGGCCGCGAGGACATCCAGTTGCGCGTCGGCGAAGGCTTGCCGATCAACGTGATCATGACCGAGGTA
CGCCGCCAGGCGCCGCAGTTGACGGTGCTCGGCACCCAGGGCCTGACCGGCTTCCGCCGCGCGCTGATCGGC
AGCGTGGCCGAGGCGGCCCTCGGCGACCTGCCATGTGACGTGCTGGCGGTGCCGCCCAAGCGCGACTAG