ViewGene
Locus Name:
GeneID:
Location:

GeneID:2868
TrivialName: PA14_47310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47310
PAO1 Ortholog Locus:PA1309
Sequence Length:861
Protein Length:286
Start: 4214475
Stop: 4215335
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04698.1|AE004560_6 (AE004560) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 283/286 (98%), Positives = 284/286 (99%)
Sequence:
ATGAATCTCTTCCAGCTCCGCGCCTTCGACGCCGTCGCCCGCGAAGGCAGTTTCACCCGCGCCGCCGAGCGC
CTGTGCATCAGCCAGCCGGCGGTGACCGGACACGTCAAGGCACTCGAGGAGCACTACCAGGTCACCCTGTTC
CGACGCACCGCCCGGCGCATCGAACTGACCGAGGAAGGCTCGCGCCTGGTGGCGATCACACGCACCCTGTTC
GCCCTGGAGGAAGAAGCCGAGGCCCTGCTCGACGCCAATCGACAATTGGTCTCCGGCCGCCTCGAGGTCGCC
GCCGACGGCCCGCACCTGGTGATGCCGATGCTCGCCCGGCTGCGCGCGAGCTATCCGGGAATCACCGTCAAC
CTGCGCCTGGGCAACGCCCAGGAAACCCTCGCGGCGCTGCTCAGCGAACACGTCGACGTCGCCGTGCTGACC
GAGGTCGAGGCGCGTCCCGGGCTGTTCCTGGAGGAGTTGGTGAATTCGCGCATCTGCGCCCTGCTGCCTCGC
CAGCATCCCTGGTGCGAACGCAGCGAAGGCGTACCGCTGGAAGAACTCGACCAGCAGATCATGGTGCTGCGC
GAACCCGGCTCGATCACCCGCCGCACCTTCGACCGCGCCTGCGCCAGCCAGGGCGTGCAGCCGCGGGTGCTG
CTGGAGCTGGACAGCCGGGAAGCGGTGACCGAAGCGGTGGCCGCCGAACTGGGCGTCGGCGTGGTGTCTTCC
CTGGAGGTCGGCAACGATCCGCGGGTTCGCGCGGTGCCGCTGGTCGGTCCCGAGCTGACCAACTGCCACCTG
ATCGGCTGCCTGGAGAAGCGCCGCGGCCTGCGGGTGATCAGGGCGTTCCTGGAACTGGCGGCGGCCTGA
Translation:
MNLFQLRAFDAVAREGSFTRAAERLCISQPAVTGHVKALEEHYQVTLFRRTARRIELTEEGSRLVAITRTLF
ALEEEAEALLDANRQLVSGRLEVAADGPHLVMPMLARLRASYPGITVNLRLGNAQETLAALLSEHVDVAVLT
EVEARPGLFLEELVNSRICALLPRQHPWCERSEGVPLEELDQQIMVLREPGSITRRTFDRACASQGVQPRVL
LELDSREAVTEAVAAELGVGVVSSLEVGNDPRVRAVPLVGPELTNCHLIGCLEKRRGLRVIRAFLELAAA*
AnnotationID:2876GeneID:2868
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 05:05:44
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:phnR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative positive transcriptional activator
Functional Category Confidence Code:5
COGs:COG0583,pfam00126
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67823.1|AE016413_5 (AE016782) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 287

 Score =  422 bits (1085), Expect = e-117
 Identities = 218/285 (76%), Positives = 240/285 (84%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.3% aligned
Score =  122 bits (306), Expect = 6e-29
Identities = 113/294 (38%), Positives = 152/294 (51%), Gaps = 13/294 (4%)

pfam00126, HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family.
CD-Length = 60 residues,  95.0% aligned
Score = 74.4 bits (183), Expect = 1e-14
Identities = 36/57 (63%), Positives = 41/57 (71%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5739




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22882




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37460




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2868_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2868
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4660
                           PA1309_tr
                           translation of PA1309
                           286
                           98.95
                           99.30
                           0
                           1403.0
     

     
     
134301
                           gb|AAG04698.1|AE004560_6
                           (AE004560) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           286
                           98.95
                           99.30
                           0
                           1403.0
     

     
     
134303
                           gb|AAN67823.1|AE016413_5
                           (AE016782) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           287
                           75.95
                           83.62
                           1
                           1085.0
     

     
     
134302
                           emb|CAD24487.1|
                           (AJ437001) putative positive transcriptional activator [Pseudomonas putida]
                           287
                           74.91
                           86.75
                           1
                           1093.0
     

     
     
4661
                           PA1570_tr
                           translation of PA1570
                           294
                           41.83
                           58.16
                           9
                           548.0
     

     






      

          
GC ORFID: 45870How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1309Glimmer Score: 

          
Start: 739434Stop: 738574

          
Length: 861


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1309 translation of PA1309Homolog Bit Score 545.0

          
Other Homologs:  t_PA1570 (ORF: BLASTX 216.0), t_PA1309 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCTCTTCCAGCTCCGCGCCTTCGACGCCGTCGCCCGCGAAGGCAGTTTCACCCGCGCCGCCGAGCGC 
CTGTGCATCAGCCAGCCGGCGGTGACCGGACACGTCAAGGCACTCGAGGAGCACTACCAGGTCACCCTGTTC 
CGACGCACCGCCCGGCGCATCGAACTGACCGAGGAAGGCTCGCGCCTGGTGGCGATCACACGCACCCTGTTC 
GCCCTGGAGGAAGAAGCCGAGGCCCTGCTCGACGCCAATCGACAATTGGTCTCCGGCCGCCTCGAGGTCGCC 
GCCGACGGCCCGCACCTGGTGATGCCGATGCTCGCCCGGCTGCGCGCGAGCTATCCGGGAATCACCGTCAAC 
CTGCGCCTGGGCAACGCCCAGGAAACCCTCGCGGCGCTGCTCAGCGAACACGTCGACGTCGCCGTGCTGACC 
GAGGTCGAGGCGCGTCCCGGGCTGTTCCTGGAGGAGTTGGTGAATTCGCGCATCTGCGCCCTGCTGCCTCGC 
CAGCATCCCTGGTGCGAACGCAGCGAAGGCGTACCGCTGGAAGAACTCGACCAGCAGATCATGGTGCTGCGC 
GAACCCGGCTCGATCACCCGCCGCACCTTCGACCGCGCCTGCGCCAGCCAGGGCGTGCAGCCGCGGGTGCTG 
CTGGAGCTGGACAGCCGGGAAGCGGTGACCGAAGCGGTGGCCGCCGAACTGGGCGTCGGCGTGGTGTCTTCC 
CTGGAGGTCGGCAACGATCCGCGGGTTCGCGCGGTGCCGCTGGTCGGTCCCGAGCTGACCAACTGCCACCTG 
ATCGGCTGCCTGGAGAAGCGCCGCGGCCTGCGGGTGATCAGGGCGTTCCTGGAACTGGCGGCGGCCTGA