ViewGene
Locus Name:
GeneID:
Location:

GeneID:2867
TrivialName: PA14_53850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53850
PAO1 Ortholog Locus:PA0804
Sequence Length:822
Protein Length:273
Start: 4775429
Stop: 4774608
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04193.1|AE004515_9 (AE004515) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 271/273 (99%), Positives = 272/273 (99%)
Sequence:
ATGAAAACGCTCACGCTGATCGATGGCCAGGAGGTCGCCGCCATCGGCCAGGGTACCTGGCATATCGGCGAG
CAGCCCGGCGAACGCAAGCGCGAGGTCGCGGCGCTGCGCGAAGGCATCGAGCTGGGGATGACGCTGATCGAT
ACCGCCGAGATGTACGCCGAGGGCGGCGCCGAAGACGTGGTCGGCGCGGCTATCGCGGGACGCCGCGAAGAG
GTCTTCCTGGTCAGCAAGGTCTACCCGCACAACGCCAGCCGCAAGGGCCTGCCGGCGGCCTGCGAGCGCAGC
CTGCGCCGGCTCGGTTGCGAAACCATCGACCTCTACCTGCTGCACTGGCAGGGCCGGTATCCGCTGGAGGAA
ACCATCGAAGCCTTCGAGCGGTTGCGCGACCAGGGCAAGATCCTGCGCTGGGGCGTGTCCAACTTCGACCTG
GGCGACATGTACGAACTGGACGGCAGCGCCTGTGCCGCCAACCAGGTGATGTACAACCTGGAGGAACGCGGT
ATCGAATACGACCTGCTGCCCTGGTGCCAGGAGCGCGGCATGCCGGTGATGGCCTACTGTCCGGTGGGGCAG
GGCGGCAGGCTGCTACGGCACCCGGCGCTCGGCGAGATCGCCGCGCGCCACGACGCCAGCAGCGCCCAGGTC
GCCCTGGCCTGGCTACTGGAGCAGGGGGTGATCGCGATCCCGAAAGCGGTGACGTCCGCTCACATCCGCCAG
AATGCGGCGGCGGCCGACCTGGAACTGAGCGCCGACGACCTGCGGGCGCTCGACCAGGCGTTCCCGCCACCT
ACCCGCAAGCGAAACCTGGCGATCGTCTGA
Translation:
MKTLTLIDGQEVAAIGQGTWHIGEQPGERKREVAALREGIELGMTLIDTAEMYAEGGAEDVVGAAIAGRREE
VFLVSKVYPHNASRKGLPAACERSLRRLGCETIDLYLLHWQGRYPLEETIEAFERLRDQGKILRWGVSNFDL
GDMYELDGSACAANQVMYNLEERGIEYDLLPWCQERGMPVMAYCPVGQGGRLLRHPALGEIAARHDASSAQV
ALAWLLEQGVIAIPKAVTSAHIRQNAAAADLELSADDLRALDQAFPPPTRKRNLAIV*
AnnotationID:2875GeneID:2867
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 17:05:19
Gene Name:
Confidence Code:3
GeneProduct:probable oxidoreductase
Cell Localization:()
Synonyms:PA0804
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0656
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase
[General function prediction only].
      CD-Length = 280 residues,  95.7% aligned
      Score =  283 bits (726), Expect = 3e-77






   
Genomic Context:






   
Comment:


















    ReferenceID:5737




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22880




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2867
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4659
                           PA0804_tr
                           translation of PA0804
                           273
                           99.26
                           99.63
                           0
                           1405.0
     

     
     
134269
                           gb|AAG04193.1|AE004515_9
                           (AE004515) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           273
                           99.26
                           99.63
                           0
                           1405.0
     

     
     
134270
                           gb|AAN68728.1|AE016505_1
                           (AE016785) oxidoreductase, aldo/keto reductase family [Pseudomonas putida KT2440]
                           274
                           63.13
                           75.54
                           22
                           923.0
     

     
     
134271
                           gb|AAO57169.1|
                           (AE016869) oxidoreductase, aldo/keto reductase family [Pseudomonas syringae pv. tomato str. DC3000]
                           274
                           61.31
                           75.91
                           2
                           880.0
     

     
     
134275
                           dbj|BAB51799.1|
                           (AP003006) probable oxidoreductase [Mesorhizobium loti]
                           282
                           56.73
                           71.63
                           10
                           811.0
     

     






      

          
GC ORFID: 45869How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0804Glimmer Score: 

          
Start: 178478Stop: 179299

          
Length: 822


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0804 translation of PA0804Homolog Bit Score 545.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene619 (ORF: BLASTX 342.0), t_PA0804 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACGCTCACGCTGATCGATGGCCAGGAGGTCGCCGCCATCGGCCAGGGTACCTGGCATATCGGCGAG 
CAGCCCGGCGAACGCAAGCGCGAGGTCGCGGCGCTGCGCGAAGGCATCGAGCTGGGGATGACGCTGATCGAT 
ACCGCCGAGATGTACGCCGAGGGCGGCGCCGAAGACGTGGTCGGCGCGGCTATCGCGGGACGCCGCGAAGAG 
GTCTTCCTGGTCAGCAAGGTCTACCCGCACAACGCCAGCCGCAAGGGCCTGCCGGCGGCCTGCGAGCGCAGC 
CTGCGCCGGCTCGGTTGCGAAACCATCGACCTCTACCTGCTGCACTGGCAGGGCCGGTATCCGCTGGAGGAA 
ACCATCGAAGCCTTCGAGCGGTTGCGCGACCAGGGCAAGATCCTGCGCTGGGGCGTGTCCAACTTCGACCTG 
GGCGACATGTACGAACTGGACGGCAGCGCCTGTGCCGCCAACCAGGTGATGTACAACCTGGAGGAACGCGGT 
ATCGAATACGACCTGCTGCCCTGGTGCCAGGAGCGCGGCATGCCGGTGATGGCCTACTGTCCGGTGGGGCAG 
GGCGGCAGGCTGCTACGGCACCCGGCGCTCGGCGAGATCGCCGCGCGCCACGACGCCAGCAGCGCCCAGGTC 
GCCCTGGCCTGGCTACTGGAGCAGGGGGTGATCGCGATCCCGAAAGCGGTGACGTCCGCTCACATCCGCCAG 
AATGCGGCGGCGGCCGACCTGGAACTGAGCGCCGACGACCTGCGGGCGCTCGACCAGGCGTTCCCGCCACCT 
ACCCGCAAGCGAAACCTGGCGATCGTCTGA