ViewGene
Locus Name:
GeneID:
Location:

GeneID:2866
TrivialName: PA14_07150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07150
PAO1 Ortholog Locus:PA0550
Sequence Length:798
Protein Length:265
Start: 619974
Stop: 619177
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03939.1|AE004491_6 (AE004491) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 262/265 (98%), Positives = 264/265 (99%)
Sequence:
ATGCCCCGCTTCGCCGCCAACCTCAGCATGCTCTACCCCCGCCACGACTTCCTCGATCGCTTCGCCGCTGCC
GCGGCGGACGGCTACGAGGGCGTGGAGTACCTGTTCCCCTATGCCTATCCTGCGGCCGAACTGAAGGCCCGG
CTGGACGACCACGGCTTGCGCCAGGTGCTGTTCAATGCCGCACCCGGCGACTGGGACAAGGGCGAGCGCGGC
CTGGCCAGCCTGCCGGGGCGCGAGGCCGAATTCCGCCGCGCCATCGCCCAGGCCATCGACTATGCCCAGGTC
CTCGGCAACCGCCACATCCATGTCATGGCCGGACTGCTGCCGGCCGGCGCCGACCGCATCCGCCACCGCGAG
ACCTACCTCGACAACCTCGCCCATGCCGCCCGCGAAGCCGCCGGCGCCAGGCTGACGGTGCTCATAGAGCCG
ATCAACAACCGCGACATGCCGGGCTTCTTCCTCACCCGCCAGGACGACGCCCAGGCCATCTGCCGCGAGGTC
GGCGCGGACAACCTGCAGGTACAGTTCGACTGCTACCACTGCCAGATCGTCGAGGGCGACCTGGCCACCACC
CTGCGTCGCGACATCGGCAATATCGGCCACGTCCAGATCGCCGGGGTACCCGACCGCCACGAGCCGGATGAC
GACAACGAAGTGAACTACCCCTACCTGTTCGAGCTACTCGACCGGCTCGGCTACCAGGGCTGGATCGGCTGC
GAGTACCGTCCGCGCGGCGACACCTCGGCAGGCCTGGAATGGCTGCGGCGCTGGCGCGCTACTCGACGCGAC
GGATGA
Translation:
MPRFAANLSMLYPRHDFLDRFAAAAADGYEGVEYLFPYAYPAAELKARLDDHGLRQVLFNAAPGDWDKGERG
LASLPGREAEFRRAIAQAIDYAQVLGNRHIHVMAGLLPAGADRIRHRETYLDNLAHAAREAAGARLTVLIEP
INNRDMPGFFLTRQDDAQAICREVGADNLQVQFDCYHCQIVEGDLATTLRRDIGNIGHVQIAGVPDRHEPDD
DNEVNYPYLFELLDRLGYQGWIGCEYRPRGDTSAGLEWLRRWRATRRDG*
AnnotationID:2874GeneID:2866
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:29
Gene Name:
Confidence Code:3
GeneProduct:putative hydroxypyruvate isomerase
Cell Localization:()
Synonyms:hyi
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3622
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58491.1| (AE016874) hydroxypyruvate isomerase, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 261

 Score =  388 bits (997), Expect = e-107
 Identities = 185/260 (71%), Positives = 214/260 (82%), Gaps = 1/260 (0%)

>gb|AAN33355.1|AE014517_15 (AE014517) hydroxypyruvate isomerase, putative [Brucella suis 1330]
          Length = 261

 Score =  265 bits (676), Expect = 3e-70
 Identities = 128/259 (49%), Positives = 171/259 (66%), Gaps = 2/259 (0%)






 
Structural Features:
COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
CD-Length = 260 residues, 100.0% aligned
Score =  388 bits (997), Expect = 5e-109
Identities = 152/261 (58%), Positives = 184/261 (70%), Gaps = 1/261 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5735




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22878




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33865




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2866_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2866
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4657
                           PA0550_tr
                           translation of PA0550
                           265
                           98.86
                           99.62
                           0
                           1406.0
     

     
     
134225
                           gb|AAG03939.1|AE004491_6
                           (AE004491) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           265
                           98.86
                           99.62
                           0
                           1406.0
     

     
     
134227
                           gb|AAC41420.1|
                           (L36817) ORF4 [Ralstonia eutropha]
                           265
                           70.18
                           80.37
                           5
                           991.0
     

     
     
134226
                           gb|AAO58491.1|
                           (AE016874) hydroxypyruvate isomerase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           265
                           69.81
                           80.75
                           4
                           996.0
     

     
     
134228
                           emb|CAD13548.1|
                           (AL646057) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           265
                           67.54
                           78.86
                           3
                           982.0
     

     






      

          
GC ORFID: 45868How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0550Glimmer Score: 

          
Start: 6421316Stop: 6420519

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0550 translation of PA0550Homolog Bit Score 546.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3732 (ORF: BLASTX 383.0), t_PA1501 (ORF: BLASTX 271.0), t_PA0550 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGCTTCGCCGCCAACCTCAGCATGCTCTACCCCCGCCACGACTTCCTCGATCGCTTCGCCGCTGCC 
GCGGCGGACGGCTACGAGGGCGTGGAGTACCTGTTCCCCTATGCCTATCCTGCGGCCGAACTGAAGGCCCGG 
CTGGACGACCACGGCTTGCGCCAGGTGCTGTTCAATGCCGCACCCGGCGACTGGGACAAGGGCGAGCGCGGC 
CTGGCCAGCCTGCCGGGGCGCGAGGCCGAATTCCGCCGCGCCATCGCCCAGGCCATCGACTATGCCCAGGTC 
CTCGGCAACCGCCACATCCATGTCATGGCCGGACTGCTGCCGGCCGGCGCCGACCGCATCCGCCACCGCGAG 
ACCTACCTCGACAACCTCGCCCATGCCGCCCGCGAAGCCGCCGGCGCCAGGCTGACGGTGCTCATAGAGCCG 
ATCAACAACCGCGACATGCCGGGCTTCTTCCTCACCCGCCAGGACGACGCCCAGGCCATCTGCCGCGAGGTC 
GGCGCGGACAACCTGCAGGTACAGTTCGACTGCTACCACTGCCAGATCGTCGAGGGCGACCTGGCCACCACC 
CTGCGTCGCGACATCGGCAATATCGGCCACGTCCAGATCGCCGGGGTACCCGACCGCCACGAGCCGGATGAC 
GACAACGAAGTGAACTACCCCTACCTGTTCGAGCTACTCGACCGGCTCGGCTACCAGGGCTGGATCGGCTGC 
GAGTACCGTCCGCGCGGCGACACCTCGGCAGGCCTGGAATGGCTGCGGCGCTGGCGCGCTACTCGACGCGAC 
GGATGA