ViewGene

Locus Name:
GeneID:
Location:

GeneID:2865
TrivialName: PA14_70430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70430
PAO1 Ortholog Locus:PA5335
Sequence Length:864
Protein Length:287
Start: 6277196
Stop: 6278059
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08720.1|AE004946_4 (AE004946) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 286/287 (99%), Positives = 286/287 (99%)
Sequence:
ATGGTGCACAGCATGACCGCCTTCGCCCGCGTCGAGCAGGCCGGTACCCACGGCACCCTGAGCTGGGAGCTG
CGCTCGGTCAACCACCGTTACCTGGAGCCCCACCTGCGCCTGCCCGACGCCTTCCGCGACCTCGAAGGCGCG
GTGCGCGAGGCGCTGCGCCAGGGCCTGTCGCGTGGCAAGGTGGAATGCACCCTGCGCTTCGCCGAGGAAACC
GCCGGCAAGAGCCTGCAGGTCGACCAGGAGCGCGCCCGCCAACTGGTCGCCGCCGCCGAAGGCGTAGCCGCC
CTGATCCGCCAGCCGGCGCCTCTCGATCCGCTCGCCGTGCTGGCCTGGCCCGGCGTACTGGTGGCCGACTCG
GCCGATCCGCAGGCGCTCAACGCCGCCGCCCTGGAAGCCTTCGGCCAGGCCCTGGAGCAACTCAAGGCCGGC
CGCTCGCGCGAAGGCCAGGAGCTGGCGAAGCTGCTCAACGATCGGCTCGACGCGATGCTGGTGGAAGTCGGC
AACCTGCGCGAACTGGTGCCGACCATGCTGGCCAACCAGCGGCAGAAGATCCTCGACCGCTTCGCCGAACTC
AAGGCCGAACTCGATCCGCAGCGCCTGGAGCAGGAACTGGTCCTGCTGGCGCAGAAGAGCGATGTCGCCGAG
GAGCTGGACCGCCTCGCCACCCACGTCGGCGAGGTCCGCCGGGTCCTCAAGGCCGGCGGCGCCGCCGGTCGG
CGCCTGGACTTCCTGATGCAGGAACTCAACCGGGAAGCCAACACTCTAGGCTCCAAGGCGTTCGACCCGCGC
TCGACCCAGGCGGCGGTCAACCTCAAGGTCCTGATCGAGCAGATGCGCGAGCAGGTCCAGAACATCGAATGA
Translation:
MVHSMTAFARVEQAGTHGTLSWELRSVNHRYLEPHLRLPDAFRDLEGAVREALRQGLSRGKVECTLRFAEET
AGKSLQVDQERARQLVAAAEGVAALIRQPAPLDPLAVLAWPGVLVADSADPQALNAAALEAFGQALEQLKAG
RSREGQELAKLLNDRLDAMLVEVGNLRELVPTMLANQRQKILDRFAELKAELDPQRLEQELVLLAQKSDVAE
ELDRLATHVGEVRRVLKAGGAAGRRLDFLMQELNREANTLGSKAFDPRSTQAAVNLKVLIEQMREQVQNIE*
AnnotationID:2873GeneID:2865
AnnotatorUID: diggins
Modification Date/Time: 2004-10-14 23:11:13
Gene Name:
Confidence Code:4
GeneProduct:putative alpha helix protein
Cell Localization:()
Synonyms:yicC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAC58439.1| (AP005073) putative alpha helix protein [Vibrio parahaemolyticus]
          Length = 288

 Score =  273 bits (699), Expect = 6e-73
 Identities = 142/288 (49%), Positives = 192/288 (66%), Gaps = 1/288 (0%)

>gb|AAC76668.1| (AE000441) putative alpha helix protein [Escherichia coli K12]
          Length = 287

 Score =  256 bits (653), Expect = 1e-67
 Identities = 138/288 (47%), Positives = 188/288 (65%), Gaps = 2/288 (0%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:5733
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22876
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34772
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2865_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2865

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4656 PA5335_tr translation of PA5335 287 99.65 99.65 0 1407.0
134188 gb|AAG08720.1|AE004946_4 (AE004946) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 287 99.65 99.65 0 1407.0
134189 gb|AAO53630.1| (AE016856) conserved hypothetical protein TIGR00255 [Pseudomonas syringae pv. tomato str. DC3000] 287 81.88 89.89 0 1179.0
134190 gb|AAN70860.1|AE016730_6 (AE016794) conserved hypothetical protein TIGR00255 [Pseudomonas putida KT2440] 316 74.05 81.01 29 1164.0
134191 gb|AAF93385.1| (AE004111) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961] 288 50.34 67.36 1 713.0
GC ORFID: 45867How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5335Glimmer Score:
Start: 5540885Stop: 5541748
Length: 864
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5335 translation of PA5335Homolog Bit Score 546.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3939 (ORF: BLASTX 459.0), t_PA5335 (ORF: GLIMMER)
GC ORF Sequence
ATGGTGCACAGCATGACCGCCTTCGCCCGCGTCGAGCAGGCCGGTACCCACGGCACCCTGAGCTGGGAGCTG
CGCTCGGTCAACCACCGTTACCTGGAGCCCCACCTGCGCCTGCCCGACGCCTTCCGCGACCTCGAAGGCGCG
GTGCGCGAGGCGCTGCGCCAGGGCCTGTCGCGTGGCAAGGTGGAATGCACCCTGCGCTTCGCCGAGGAAACC
GCCGGCAAGAGCCTGCAGGTCGACCAGGAGCGCGCCCGCCAACTGGTCGCCGCCGCCGAAGGCGTAGCCGCC
CTGATCCGCCAGCCGGCGCCTCTCGATCCGCTCGCCGTGCTGGCCTGGCCCGGCGTACTGGTGGCCGACTCG
GCCGATCCGCAGGCGCTCAACGCCGCCGCCCTGGAAGCCTTCGGCCAGGCCCTGGAGCAACTCAAGGCCGGC
CGCTCGCGCGAAGGCCAGGAGCTGGCGAAGCTGCTCAACGATCGGCTCGACGCGATGCTGGTGGAAGTCGGC
AACCTGCGCGAACTGGTGCCGACCATGCTGGCCAACCAGCGGCAGAAGATCCTCGACCGCTTCGCCGAACTC
AAGGCCGAACTCGATCCGCAGCGCCTGGAGCAGGAACTGGTCCTGCTGGCGCAGAAGAGCGATGTCGCCGAG
GAGCTGGACCGCCTCGCCACCCACGTCGGCGAGGTCCGCCGGGTCCTCAAGGCCGGCGGCGCCGCCGGTCGG
CGCCTGGACTTCCTGATGCAGGAACTCAACCGGGAAGCCAACACTCTAGGCTCCAAGGCGTTCGACCCGCGC
TCGACCCAGGCGGCGGTCAACCTCAAGGTCCTGATCGAGCAGATGCGCGAGCAGGTCCAGAACATCGAATGA