ViewGene
Locus Name:
GeneID:
Location:

GeneID:2864
TrivialName: PA14_68940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68940
PAO1 Ortholog Locus:PA5220
Sequence Length:822
Protein Length:273
Start: 6150109
Stop: 6150930
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08605.1|AE004935_2 (AE004935) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 270/273 (98%), Positives = 271/273 (99%)
Sequence:
ATGAACCATGTCATCACCCCCCACAGCAAGCTGCTCGGCGTCATCGAGCCAGTCCTCAACGACATGCCCGCC
GGAACCCTGCGCCATGCGCTGTTCCGGGCCTTCTGGGACGAGACGGCGTCGTTGCTGGACATCGAGGACGCC
TTCGCCCGGGTCACCGCCCGGCGCCAGGCGGTCGAGCCGCTGCGCAAGTTCTTCGCCAGCTGGTCGAAGACC
AACAACTCGGCGGCCAGCGTTTCCGGGCTGGCCAATCGCCTGACCCTGCTGGCCCGTTCGGAACAGGGTTCG
GCAGCGGCAGACCAGCTCTATCGAGGCTGCGGCAGCCTGCAACGGATCACCGACGAAGACCTCGGCGCCCTC
GGCAACACCGTGCATGCCGATCTTTTCTACACCATGGCCACCACCCTTTGCGGCGACGACCGCTGGCTGCTG
CGCGAGAACTGCCTGCCTTCGGCGCAGGCGTTCAAGGACTGGACCGACCGCCAGCGCCTGCGCGAGCGCGAC
CTGATGCAGGGACTGCTGACCACGCTGGTACACGAGGTCTATACCCACGGCGAGGTGGAGTACATCCACCCG
CTGTACAAGGAATGGTTCAGCCGCGACATGGGCGTACCCGCCGAACGCGCCCGCGCCACCGTGGCCTGGGTA
ACGGTGCACACCGGCGGCACCGAGAGCAATCACTTCGCCCACGCCACGGCGGCGGTGAACGCCTTCGTCGAG
GCGATGGAAATCGAGGTGAACGAAGAAGCCGCGCGCAACCTGTTCGGGCTCTACCTGCGCAACAAGGCGCAG
GTCATGCGTGACTGCGCGGCGATGTTCTGA
Translation:
MNHVITPHSKLLGVIEPVLNDMPAGTLRHALFRAFWDETASLLDIEDAFARVTARRQAVEPLRKFFASWSKT
NNSAASVSGLANRLTLLARSEQGSAAADQLYRGCGSLQRITDEDLGALGNTVHADLFYTMATTLCGDDRWLL
RENCLPSAQAFKDWTDRQRLRERDLMQGLLTTLVHEVYTHGEVEYIHPLYKEWFSRDMGVPAERARATVAWV
TVHTGGTESNHFAHATAAVNAFVEAMEIEVNEEAARNLFGLYLRNKAQVMRDCAAMF*
AnnotationID:2872GeneID:2864
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 05:05:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA5220
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:5731




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22874




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2864
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4655
                           PA5220_tr
                           translation of PA5220
                           273
                           98.90
                           99.26
                           0
                           1407.0
     

     
     
134187
                           gb|AAG08605.1|AE004935_2
                           (AE004935) hypothetical protein PA5220 [Pseudomonas aeruginosa PAO1]
                           273
                           98.90
                           99.26
                           0
                           1407.0
     

     






      

          
GC ORFID: 45866How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5220Glimmer Score: 

          
Start: 5413795Stop: 5414616

          
Length: 822


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5220 translation of PA5220Homolog Bit Score 546.0

          
Other Homologs:  t_PA5220 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCATGTCATCACCCCCCACAGCAAGCTGCTCGGCGTCATCGAGCCAGTCCTCAACGACATGCCCGCC 
GGAACCCTGCGCCATGCGCTGTTCCGGGCCTTCTGGGACGAGACGGCGTCGTTGCTGGACATCGAGGACGCC 
TTCGCCCGGGTCACCGCCCGGCGCCAGGCGGTCGAGCCGCTGCGCAAGTTCTTCGCCAGCTGGTCGAAGACC 
AACAACTCGGCGGCCAGCGTTTCCGGGCTGGCCAATCGCCTGACCCTGCTGGCCCGTTCGGAACAGGGTTCG 
GCAGCGGCAGACCAGCTCTATCGAGGCTGCGGCAGCCTGCAACGGATCACCGACGAAGACCTCGGCGCCCTC 
GGCAACACCGTGCATGCCGATCTTTTCTACACCATGGCCACCACCCTTTGCGGCGACGACCGCTGGCTGCTG 
CGCGAGAACTGCCTGCCTTCGGCGCAGGCGTTCAAGGACTGGACCGACCGCCAGCGCCTGCGCGAGCGCGAC 
CTGATGCAGGGACTGCTGACCACGCTGGTACACGAGGTCTATACCCACGGCGAGGTGGAGTACATCCACCCG 
CTGTACAAGGAATGGTTCAGCCGCGACATGGGCGTACCCGCCGAACGCGCCCGCGCCACCGTGGCCTGGGTA 
ACGGTGCACACCGGCGGCACCGAGAGCAATCACTTCGCCCACGCCACGGCGGCGGTGAACGCCTTCGTCGAG 
GCGATGGAAATCGAGGTGAACGAAGAAGCCGCGCGCAACCTGTTCGGGCTCTACCTGCGCAACAAGGCGCAG 
GTCATGCGTGACTGCGCGGCGATGTTCTGA