ViewGene

Locus Name:
GeneID:
Location:

GeneID:2863
TrivialName: PA14_57470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57470
PAO1 Ortholog Locus:PA4422
Sequence Length:849
Protein Length:282
Start: 5121140
Stop: 5120292
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07810.1|AE004857_1 (AE004857) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 281/282 (99%), Positives = 282/282 (100%)
Sequence:
GTGTCAGCAGGCACTCTGTTCGTAGTGGCGACCCCGATCGGCAATCTCGACGACATCACCCCGCGCGCCCTG
CGGGTGCTGCGGGAGGTGGCCCTGGTGGCTGCGGAGGATACCCGCCATTCGATCCGGCTGTTCCAGCACTTC
GGCATCGAGACGCCATTGGCGGCCTGCCACGAGCACAACGAGCGCGAGGAGGGCGGGCGCTTCATCTCCCGG
CTGCAGGGGGGGGAGGACGTCGCGCTGATCTCGGACGCCGGTACCCCGCTGATTTCCGATCCCGGCTTCCAC
CTGGTGCGCCAGGCACAGGCGCTGGGTATCCGGGTGGTCCCGGTGCCGGGCTCCTGCGCGCTGATCGCGGCG
CTGTCGGCGGCGGGATTGCCGTCGGACCGGTTCATCTTCGAAGGTTTCCTGCCCGCCAAGGCTGCGGGACGA
CGCAGCCGCCTCCAGGCGGTACAGGAAGAGCCACGCACGCTGATTTTCTACGAGGCGCCCCATCGTCTGCTG
GAAAGCCTGGCGGACATGCGCGACGTGTTCGGCGGGGAGCGCCGTGCGGTGCTGGCGCGGGAGCTGAGCAAG
ACCTTCGAGACCATTCGCAGCCTGCCGTTGGCCGAACTGCATGATTGGGTCGCGTCGGACAGCAACCAGCAG
CGCGGCGAGTGCGTTGTGCTGGTGGCGGGGTGGCAGGCGCCGGAAGGCGAGGAGTCGATCGGTGCAGAGGCG
CTCAGGGTGCTCGACCTGCTGCTTGCCGAGCTGCCGTTGAAGAAAGCCGCGGCGCTGGCGGCGGAAATCACC
GGGGTGCGAAAAAACCTTTTGTATCAACAGGCTTTGCAACGCCAAGGGAAGAGTTGA
Translation:
MSAGTLFVVATPIGNLDDITPRALRVLREVALVAAEDTRHSIRLFQHFGIETPLAACHEHNEREEGGRFISR
LQGGEDVALISDAGTPLISDPGFHLVRQAQALGIRVVPVPGSCALIAALSAAGLPSDRFIFEGFLPAKAAGR
RSRLQAVQEEPRTLIFYEAPHRLLESLADMRDVFGGERRAVLARELSKTFETIRSLPLAELHDWVASDSNQQ
RGECVVLVAGWQAPEGEESIGAEALRVLDLLLAELPLKKAAALAAEITGVRKNLLYQQALQRQGKS*
AnnotationID:2871GeneID:2863
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 18:06:33
Gene Name:
Confidence Code:3
GeneProduct:putative methyltransferases
Cell Localization:()
Synonyms:PA4422
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0313, pfam00590
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66950.1|AE016323_3 (AE016779) tetrapyrrole methylase family protein [Pseudomonas
           putida KT2440]
          Length = 294

 Score =  448 bits (1152), Expect = e-125
 Identities = 222/278 (79%), Positives = 254/278 (91%)

>gb|AAO57867.1| (AE016871) tetrapyrrole methylase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 289

 Score =  432 bits (1110), Expect = e-120
 Identities = 213/276 (77%), Positives = 247/276 (89%)

>gb|AAL22135.1| (AE008850) putative methyltransferase [Salmonella typhimurium LT2]
          Length = 287

 Score =  330 bits (845), Expect = 7e-90
 Identities = 170/278 (61%), Positives = 214/278 (76%), Gaps = 2/278 (0%)
Structural Features:
COG0313, Predicted methyltransferases 
CD-Length = 275 residues,  99.6% aligned
Score =  353 bits (907), Expect = 3e-98
Identities = 160/279 (57%), Positives = 203/279 (72%), Gaps = 5/279 (1%)

pfam00590, TP_methylase, Tetrapyrrole (Corrin/Porphyrin) Methylases. 
CD-Length = 208 residues, 100.0% aligned
Score =  131 bits (330), Expect = 2e-31
Identities = 58/209 (27%), Positives = 87/209 (41%), Gaps = 8/209 (3%)
Genomic Context:
Comment:
ReferenceID:14683
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22872
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31463
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2863_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2863

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4654 PA4422_tr translation of PA4422 282 99.64 99.99 0 1406.0
134099 gb|AAG07810.1|AE004857_1 (AE004857) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 282 99.29 99.99 0 1403.0
134100 gb|AAN66950.1|AE016323_3 (AE016779) tetrapyrrole methylase family protein [Pseudomonas putida KT2440] 294 75.51 86.39 12 1147.0
134101 gb|AAO57867.1| (AE016871) tetrapyrrole methylase family protein [Pseudomonas syringae pv. tomato str. DC3000] 291 73.53 85.56 11 1104.0
134105 dbj|BAB37450.1| (AP002564) hypothetical protein [Escherichia coli O157:H7] 290 58.96 73.79 12 849.0
GC ORFID: 45865How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4422Glimmer Score:
Start: 4384819Stop: 4383971
Length: 849
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4422 translation of PA4422Homolog Bit Score 546.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene2036 (ORF: BLASTX 434.0), t_PA4422 (ORF: GLIMMER)
GC ORF Sequence
GTGTCAGCAGGCACTCTGTTCGTAGTGGCGACCCCGATCGGCAATCTCGACGACATCACCCCGCGCGCCCTG
CGGGTGCTGCGGGAGGTGGCCCTGGTGGCTGCGGAGGATACCCGCCATTCGATCCGGCTGTTCCAGCACTTC
GGCATCGAGACGCCATTGGCGGCCTGCCACGAGCACAACGAGCGCGAGGAGGGCGGGCGCTTCATCTCCCGG
CTGCAGGGGGGGGAGGACGTCGCGCTGATCTCGGACGCCGGTACCCCGCTGATTTCCGATCCCGGCTTCCAC
CTGGTGCGCCAGGCACAGGCGCTGGGTATCCGGGTGGTCCCGGTGCCGGGCTCCTGCGCGCTGATCGCGGCG
CTGTCGGCGGCGGGATTGCCGTCGGACCGGTTCATCTTCGAAGGTTTCCTGCCCGCCAAGGCTGCGGGACGA
CGCAGCCGCCTCCAGGCGGTACAGGAAGAGCCACGCACGCTGATTTTCTACGAGGCGCCCCATCGTCTGCTG
GAAAGCCTGGCGGACATGCGCGACGTGTTCGGCGGGGAGCGCCGTGCGGTGCTGGCGCGGGAGCTGAGCAAG
ACCTTCGAGACCATTCGCAGCCTGCCGTTGGCCGAACTGCATGATTGGGTCGCGTCGGACAGCAACCAGCAG
CGCGGCGAGTGCGTTGTGCTGGTGGCGGGGTGGCAGGCGCCGGAAGGCGAGGAGTCGATCGGTGCAGAGGCG
CTCAGGGTGCTCGACCTGCTGCTTGCCGAGCTGCCGTTGAAGAAAGCCGCGGCGCTGGCGGCGGAAATCACC
GGGGTGCGAAAAAACCTTTTGTATCAACAGGCTTTGCAACGCCAAGGGAAGAGTTGA