ViewGene

Locus Name:
GeneID:
Location:

GeneID:2862
TrivialName: PA14_22560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22560
PAO1 Ortholog Locus:PA3222
Sequence Length:894
Protein Length:297
Start: 1963696
Stop: 1962803
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06610.1|AE004745_7 (AE004745) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 281/285 (98%), Positives = 283/285 (99%)
Sequence:
ATGAATCGACGTTCCGCCCTCGCCGCCCTGCACGGCGGCGCCCTCCTCTTCGGCCTGACCGGGGTGTTCGGC
AAGCTGGCCAGCGCCTCCCCCGGGGTGATCGTGTTCGGTCGCGCGCTGTTCGCGGTGCTCGCCCTCGGCCTC
TTCGCCCGCCTCGCGGGCCAGGCCTGGCGCGCCCTGGGACCCGCGCAATGGCTGCGCCTGGCGCTCTGCGGC
CTGCTCCTGGCCGGGCACTGGGTGAGTTTCTTCATCGCCGTGAAGACCGCCGGCGTGGCCATCGCCACCCTC
GGCTTCGCCAGCTTCCCGGCCTTCACGGTAATCCTCGAAGGGCTGCTCTTCCGCGAGCGCATTCATCTCGCG
GAAGGACTGCTGGTAGTCCTGGTCAGCCTTGGCCTGGTGCTGGTCACGCCGAACTTCGACCTCGCCAGCGGC
GCCACCCTCGGCCTGCTCTGGGCGATCCTTTCCGGCCTGCTGTTCGCCCTGCTGTCGCTGGCCAACCGCAGC
AACAGCGGGCAGGTCGGCCCGGTGCAGGCGGCGCTCTGGCAGAACCTGGTAGTCGCCCTGTGCCTGCTGCCA
TTCGCGGTCGGCGAACTACCGGCGCTACCCGCTCTCGACTGGCTCTGGCTGGCCCTGCTGGGCGTCTTCTGC
ACCGGCCTGGCGCACAGCCTGTTCGTGGCCAGCCTGGCGGTGGTCAAGGCCCGCACCGCGGCACTGGTATTC
TCCCTGGAGCCGGTCTACGGGATCGCCTTCGCCTGGCTGTTGTTCCATGAGACGCCGGGGCCGCGGATGTTC
CTCGGCGGCGCCCTGATCGTCCTCGCCATCGTGCTGTCGGCGCGACTCGGCGCCAGGAACCGGCCGGTCCCG
GACAACGGCTTGTCCGCTAACCGGGGCTGA
Translation:
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCG
LLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASG
ATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFC
TGLAHSLFVASLAVVKARTAALVFSLEPVYGIAFAWLLFHETPGPRMFLGGALIVLAIVLSARLGARNRPVP
DNGLSANRG*
AnnotationID:2870GeneID:2862
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 10:10:02
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA3222
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2962
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70086.1|AE016648_4 (AE016790) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 296

 Score =  403 bits (1036), Expect = e-112
 Identities = 213/287 (74%), Positives = 235/287 (81%), Gaps = 1/287 (0%)

Structural Features:
COG2962, RarD, Predicted permeases
CD-Length = 293 residues,  90.1% aligned
Score = 58.6 bits (142), Expect = 8e-10
Identities = 69/271 (25%), Positives = 99/271 (36%), Gaps = 16/271 (5%)
Genomic Context:
Comment:
ReferenceID:5727
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22870
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32323
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2862_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2862

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4653 PA3222_tr translation of PA3222 302 93.70 94.70 8 1404.0
134093 gb|AAG06610.1|AE004745_7 (AE004745) hypothetical protein PA3222 [Pseudomonas aeruginosa PAO1] 302 93.70 94.70 8 1404.0
134094 gb|AAN70086.1|AE016648_4 (AE016790) membrane protein, putative [Pseudomonas putida KT2440] 302 71.19 79.13 11 1040.0
134095 emb|CAE32388.1| (BX640442) conserved hypothetical integral membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 300 56.33 68.66 18 815.0
134096 emb|CAE37738.1| (BX640430) conserved hypothetical integral membrane protein [Bordetella parapertussis] 300 56.33 68.66 18 815.0
GC ORFID: 45864How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3222Glimmer Score:
Start: 2990235Stop: 2991128
Length: 894
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3222 translation of PA3222Homolog Bit Score 546.0
Other Homologs: t_PA3222 (ORF: GLIMMER)
GC ORF Sequence
ATGAATCGACGTTCCGCCCTCGCCGCCCTGCACGGCGGCGCCCTCCTCTTCGGCCTGACCGGGGTGTTCGGC
AAGCTGGCCAGCGCCTCCCCCGGGGTGATCGTGTTCGGTCGCGCGCTGTTCGCGGTGCTCGCCCTCGGCCTC
TTCGCCCGCCTCGCGGGCCAGGCCTGGCGCGCCCTGGGACCCGCGCAATGGCTGCGCCTGGCGCTCTGCGGC
CTGCTCCTGGCCGGGCACTGGGTGAGTTTCTTCATCGCCGTGAAGACCGCCGGCGTGGCCATCGCCACCCTC
GGCTTCGCCAGCTTCCCGGCCTTCACGGTAATCCTCGAAGGGCTGCTCTTCCGCGAGCGCATTCATCTCGCG
GAAGGACTGCTGGTAGTCCTGGTCAGCCTTGGCCTGGTGCTGGTCACGCCGAACTTCGACCTCGCCAGCGGC
GCCACCCTCGGCCTGCTCTGGGCGATCCTTTCCGGCCTGCTGTTCGCCCTGCTGTCGCTGGCCAACCGCAGC
AACAGCGGGCAGGTCGGCCCGGTGCAGGCGGCGCTCTGGCAGAACCTGGTAGTCGCCCTGTGCCTGCTGCCA
TTCGCGGTCGGCGAACTACCGGCGCTACCCGCTCTCGACTGGCTCTGGCTGGCCCTGCTGGGCGTCTTCTGC
ACCGGCCTGGCGCACAGCCTGTTCGTGGCCAGCCTGGCGGTGGTCAAGGCCCGCACCGCGGCACTGGTATTC
TCCCTGGAGCCGGTCTACGGGATCGCCTTCGCCTGGCTGTTGTTCCATGAGACGCCGGGGCCGCGGATGTTC
CTCGGCGGCGCCCTGATCGTCCTCGCCATCGTGCTGTCGGCGCGACTCGGCGCCAGGAACCGGCCGGTCCCG
GACAACGGCTTGTCCGCTAACCGGGGCTGA