ViewGene
Locus Name:
GeneID:
Location:

GeneID:2861
TrivialName: PA14_23060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23060
PAO1 Ortholog Locus:PA3184
Sequence Length:858
Protein Length:285
Start: 1999972
Stop: 1999115
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06572.1|AE004742_8 (AE004742) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 285/285 (100%), Positives = 285/285 (100%)
Sequence:
ATGAAAAACCTGCTGGAGCAGATCCAGAGCCGCCTGGACGAACTGAACAAGGCGGAGCGCAAAGTCGCCGAG
GTCATCCTGCAGAACCCGCAGCAGGCCACCCGCTTCAGCATCGCCGCCCTGGCCCAGGCGGCAGCGGTCAGC
GAACCGACGGTGAACCGCTTCTGTCGCTCCTTCGGCATGAGCGGCTATCCGGAACTGAAGATCCAGCTGGCC
CAGAGCCTGGCTAGCGGCGCTGCCTTCGTGACCCAGGCGGTAGCCGAGGACGACGGGCCGGAAGCCTATACA
CGGAAGATCTTCAGCAACACCATCGCCTCCCTCGACAGCGCCCACAAGCTGCTCGACCCACGCGTCATCGAC
CGCGCCGTGGACCTGTTGATCCAGGCCCGGCAGATCCACTTCTTCGGTCTCGGCGCCTCGGCCTCGGTAGCG
CTCGACGCGCAGCACAAGTTCTTCCGCTTCAACCTGGCGGTGAGCGCCCAGGCCGACGTGCTGATGCAACGG
ATGATCGCCTCGGTGGCGCATACCGGCGACCTGTTCGTGGTGATTTCCTATACCGGACGCACCCGCGAGCTG
GTGGAGGTGGCGCACCTTGCGCGGGAGAACGGCGCCTCGGTGCTCGGCCTGACCGCCGCCGGCTCGCCGCTG
GCCAGGGCCAGCACCCTGTGCCTGGACATCCCGTTGCCGGAAGACACCGACATCTACATGCCGATGACTTCG
CGGATCGTCCAGCTCACCGTGCTCGACGTACTGGCCACCGGAGTGACCCTGCGCCGCGGCGTGGACTTCCAG
CCGCACCTGCGGCGGATCAAGGAAAGCCTGGTGCCGACCCGCTATCCCCTCGACGAGGACAACTGA
Translation:
MKNLLEQIQSRLDELNKAERKVAEVILQNPQQATRFSIAALAQAAAVSEPTVNRFCRSFGMSGYPELKIQLA
QSLASGAAFVTQAVAEDDGPEAYTRKIFSNTIASLDSAHKLLDPRVIDRAVDLLIQARQIHFFGLGASASVA
LDAQHKFFRFNLAVSAQADVLMQRMIASVAHTGDLFVVISYTGRTRELVEVAHLARENGASVLGLTAAGSPL
ARASTLCLDIPLPEDTDIYMPMTSRIVQLTVLDVLATGVTLRRGVDFQPHLRRIKESLVPTRYPLDEDN*
AnnotationID:2869GeneID:2861
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 06:06:07
Gene Name:hexR
Confidence Code:3
GeneProduct:putative transcriptional regulator, RpiR family
Cell Localization:()
Synonyms:yebK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative hex regulon repressor
Functional Category Confidence Code:5
COGs:COG1737,pfam01418
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66646.1|AE016292_6 (AE016777) transcriptional regulator HexR [Pseudomonas putida
           KT2440]
          Length = 287

 Score =  464 bits (1195), Expect = e-130
 Identities = 239/285 (83%), Positives = 264/285 (92%)

>gb|AAO54823.1| (AE016860) Hex regulon repressor [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 288

 Score =  453 bits (1166), Expect = e-127
 Identities = 232/283 (81%), Positives = 261/283 (92%)

>gb|AAN80724.1|AE016761_299 (AE016761) Hex regulon repressor [Escherichia coli CFT073]
          Length = 289

 Score =  311 bits (797), Expect = 3e-84
 Identities = 161/277 (58%), Positives = 209/277 (75%)






 
Structural Features:
COG1737, RpiR, Transcriptional regulators [Transcription]
CD-Length = 281 residues,  99.6% aligned
Score =  254 bits (650), Expect = 9e-69
Identities = 126/280 (45%), Positives = 174/280 (62%), Gaps = 1/280 (0%)

pfam01418, HTH_6, Helix-turn-helix domain, rpiR family.
CD-Length = 106 residues, 100.0% aligned
Score =  132 bits (333), Expect = 6e-32
Identities = 52/106 (49%), Positives = 69/106 (65%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5725




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22868




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32360




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2861_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2861
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4651
                           PA3184_tr
                           translation of PA3184
                           285
                           99.99
                           99.99
                           0
                           1406.0
     

     
     
134063
                           gb|AAG06572.1|AE004742_8
                           (AE004742) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           285
                           99.99
                           99.99
                           0
                           1406.0
     

     
     
134064
                           gb|AAC38310.1|
                           (AF029673) HexR [Pseudomonas aeruginosa]
                           285
                           99.64
                           99.64
                           0
                           1402.0
     

     
     
134065
                           gb|AAN66646.1|AE016292_6
                           (AE016777) transcriptional regulator HexR [Pseudomonas putida KT2440]
                           287
                           83.27
                           91.98
                           2
                           1195.0
     

     
     
134066
                           gb|AAO54823.1|
                           (AE016860) Hex regulon repressor [Pseudomonas syringae pv. tomato str. DC3000]
                           288
                           80.55
                           90.62
                           3
                           1166.0
     

     






      

          
GC ORFID: 45863How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3184Glimmer Score: 

          
Start: 2953959Stop: 2954816

          
Length: 858


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3184 translation of PA3184Homolog Bit Score 546.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4952 (ORF: BLASTX 456.0), t_PA5438 (ORF: BLASTX 225.0), t_PA3184 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAACCTGCTGGAGCAGATCCAGAGCCGCCTGGACGAACTGAACAAGGCGGAGCGCAAAGTCGCCGAG 
GTCATCCTGCAGAACCCGCAGCAGGCCACCCGCTTCAGCATCGCCGCCCTGGCCCAGGCGGCAGCGGTCAGC 
GAACCGACGGTGAACCGCTTCTGTCGCTCCTTCGGCATGAGCGGCTATCCGGAACTGAAGATCCAGCTGGCC 
CAGAGCCTGGCTAGCGGCGCTGCCTTCGTGACCCAGGCGGTAGCCGAGGACGACGGGCCGGAAGCCTATACA 
CGGAAGATCTTCAGCAACACCATCGCCTCCCTCGACAGCGCCCACAAGCTGCTCGACCCACGCGTCATCGAC 
CGCGCCGTGGACCTGTTGATCCAGGCCCGGCAGATCCACTTCTTCGGTCTCGGCGCCTCGGCCTCGGTAGCG 
CTCGACGCGCAGCACAAGTTCTTCCGCTTCAACCTGGCGGTGAGCGCCCAGGCCGACGTGCTGATGCAACGG 
ATGATCGCCTCGGTGGCGCATACCGGCGACCTGTTCGTGGTGATTTCCTATACCGGACGCACCCGCGAGCTG 
GTGGAGGTGGCGCACCTTGCGCGGGAGAACGGCGCCTCGGTGCTCGGCCTGACCGCCGCCGGCTCGCCGCTG 
GCCAGGGCCAGCACCCTGTGCCTGGACATCCCGTTGCCGGAAGACACCGACATCTACATGCCGATGACTTCG 
CGGATCGTCCAGCTCACCGTGCTCGACGTACTGGCCACCGGAGTGACCCTGCGCCGCGGCGTGGACTTCCAG 
CCGCACCTGCGGCGGATCAAGGAAAGCCTGGTGCCGACCCGCTATCCCCTCGACGAGGACAACTGA