ViewGene
Locus Name:
GeneID:
Location:

GeneID:2859
TrivialName: PA14_34500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34500
PAO1 Ortholog Locus:PA2329
Sequence Length:837
Protein Length:278
Start: 3066463
Stop: 3067299
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05717.1|AE004659_3 (AE004659) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 278/278 (100%), Positives = 278/278 (100%)
Sequence:
ATGAGCGAGGCGCTCCTCGACGCTCGCGGGATCGCCCTCGGCTATCCGCGCGGTGCCGGCTGGCAGGCGGTG
CTCGGCGATTTCGAATTGCGCCTGGGTGCCGGCGAGGTGGTCTCGATCCTCGGTCCCAGCGGGGTCGGCAAG
TCCAGCCTGCTGCGCGTGCTGGCCGGCCTGCAGGAGCCGGCCGCCGGCAGCGTGCGGGTACTCGGCGAGCCC
CTGCGCGGCCCGCATCCGGGCGTCGCGGTGGCGTTCCAGGACCCCAGCCTGTTGCCTTGGCTGAACCTGGAG
AAGAACGTCGCCTTCGGCCTCGATTTCGCCCGCCAGCCGCACCTCGACGCGGCCACCCGCCAGGCCCGCGTC
GACCAGGCGATCGCCGCGGTCGGCCTGGAGCACGCCCGTGCCCGCTACCCGGCACAACTCTCCGGCGGCATG
GCCCAGCGCACCGCGCTGGCCCGCTGCCTGGCACGGCAGCCGAAGGTGCTGCTGCTCGACGAACCTTTCGGC
GCGCTGGACGAAGTGACCCGCGCCGACATGCAGCAACTGCTGCTGCGGGCGATCCACGAGCGCGGCACCGCC
GTGGTCCTGATCACCCACGATATCGACGAGGCCCTGCTGCTCTCCGAACGCATCCTGCTACTGGGTGACAGC
CCGGCGCGGACCCTCGGCGAGTGGCGCATCGACCTGCCGCAGCCACGCGCGGAGCTGGTCGAGGAACTGGGC
GCGTTGCGCATCGAGATCCTGAAAACCCTACGGCGGGCGAGCCGCACCCATGCCCATCCCATCGCTCAGCCG
GAGGCCTCCCATGTGCCTGGACGACCCGACCCATTCCCGACGTGA
Translation:
MSEALLDARGIALGYPRGAGWQAVLGDFELRLGAGEVVSILGPSGVGKSSLLRVLAGLQEPAAGSVRVLGEP
LRGPHPGVAVAFQDPSLLPWLNLEKNVAFGLDFARQPHLDAATRQARVDQAIAAVGLEHARARYPAQLSGGM
AQRTALARCLARQPKVLLLDEPFGALDEVTRADMQQLLLRAIHERGTAVVLITHDIDEALLLSERILLLGDS
PARTLGEWRIDLPQPRAELVEELGALRIEILKTLRRASRTHAHPIAQPEASHVPGRPDPFPT*
AnnotationID:2867GeneID:2859
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 15:03:25
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA2329
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1116,COG4525,cd00267,pfam00005
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69237.1|AE016558_7 (AE016787) sulfonate ABC transporter, ATP-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 273

 Score =  394 bits (1013), Expect = e-109
 Identities = 208/273 (76%), Positives = 228/273 (83%), Gaps = 2/273 (0%)

>gb|AAD53162.1|AF176824_5 (AF176824) ATP-binding protein of ABC transporter SrpK
           [Synechococcus sp. PCC 7942]
          Length = 270

 Score =  234 bits (596), Expect = 5e-61
 Identities = 121/249 (48%), Positives = 165/249 (66%)

>gb|AAM35735.1| (AE011716) ABC transporter ATP-binding protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 252

 Score =  197 bits (501), Expect = 6e-50
 Identities = 111/224 (49%), Positives = 144/224 (64%), Gaps = 3/224 (1%)








 
Structural Features:
COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 248 residues,  98.8% aligned
Score =  271 bits (695), Expect = 6e-74
Identities = 113/252 (44%), Positives = 155/252 (61%), Gaps = 7/252 (2%)

COG4525, TauB, ABC-type taurine transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 259 residues,  86.5% aligned
Score =  185 bits (472), Expect = 4e-48
Identities = 102/229 (44%), Positives = 143/229 (62%), Gaps = 5/229 (2%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues,  99.5% aligned
Score =  169 bits (430), Expect = 3e-43
Identities = 87/224 (38%), Positives = 129/224 (57%), Gaps = 14/224 (6%)

pfam00005, ABC_tran, ABC transporter.
CD-Length = 183 residues,  99.5% aligned
Score =  151 bits (383), Expect = 8e-38
Identities = 72/186 (38%), Positives = 111/186 (59%), Gaps = 9/186 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5721




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22864




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32467




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2859_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2859
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4639
                           PA2329_tr
                           translation of PA2329
                           278
                           99.99
                           99.99
                           0
                           1406.0
     

     
     
133770
                           gb|AAG05717.1|AE004659_3
                           (AE004659) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           278
                           99.99
                           99.99
                           0
                           1406.0
     

     
     
133771
                           gb|AAN69237.1|AE016558_7
                           (AE016787) sulfonate ABC transporter, ATP-binding protein, putative [Pseudomonas putida KT2440]
                           280
                           74.28
                           81.42
                           9
                           1017.0
     

     
     
133775
                           gb|AAM35735.1|
                           (AE011716) ABC transporter ATP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
                           280
                           41.78
                           54.64
                           30
                           498.0
     

     
     
133773
                           gb|AAD53162.1|AF176824_5
                           (AF176824) ATP-binding protein of ABC transporter SrpK [Synechococcus sp. PCC 7942]
                           292
                           41.43
                           56.84
                           36
                           589.0
     

     






      

          
GC ORFID: 45861How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2329Glimmer Score: 

          
Start: 1887453Stop: 1886617

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2329 translation of PA2329Homolog Bit Score 546.0

          
Other Homologs:  t_PA2294 (ORF: BLASTX 182.0), t_PA3937 (ORF: BLASTX 177.0), psyr_15may02_Scaffold8_revised_gene7773 (ORF: BLASTX 164.0), t_PA0184 (ORF: BLASTX 163.0), t_PA3514 (ORF: BLASTX 159.0), t_PA2308 (ORF: BLASTX 154.0), psyr_15may02_Scaffold5_revised_gene6172 (ORF: BLASTX 145.0), t_PA2329 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGGCGCTCCTCGACGCTCGCGGGATCGCCCTCGGCTATCCGCGCGGTGCCGGCTGGCAGGCGGTG 
CTCGGCGATTTCGAATTGCGCCTGGGTGCCGGCGAGGTGGTCTCGATCCTCGGTCCCAGCGGGGTCGGCAAG 
TCCAGCCTGCTGCGCGTGCTGGCCGGCCTGCAGGAGCCGGCCGCCGGCAGCGTGCGGGTACTCGGCGAGCCC 
CTGCGCGGCCCGCATCCGGGCGTCGCGGTGGCGTTCCAGGACCCCAGCCTGTTGCCTTGGCTGAACCTGGAG 
AAGAACGTCGCCTTCGGCCTCGATTTCGCCCGCCAGCCGCACCTCGACGCGGCCACCCGCCAGGCCCGCGTC 
GACCAGGCGATCGCCGCGGTCGGCCTGGAGCACGCCCGTGCCCGCTACCCGGCACAACTCTCCGGCGGCATG 
GCCCAGCGCACCGCGCTGGCCCGCTGCCTGGCACGGCAGCCGAAGGTGCTGCTGCTCGACGAACCTTTCGGC 
GCGCTGGACGAAGTGACCCGCGCCGACATGCAGCAACTGCTGCTGCGGGCGATCCACGAGCGCGGCACCGCC 
GTGGTCCTGATCACCCACGATATCGACGAGGCCCTGCTGCTCTCCGAACGCATCCTGCTACTGGGTGACAGC 
CCGGCGCGGACCCTCGGCGAGTGGCGCATCGACCTGCCGCAGCCACGCGCGGAGCTGGTCGAGGAACTGGGC 
GCGTTGCGCATCGAGATCCTGAAAACCCTACGGCGGGCGAGCCGCACCCATGCCCATCCCATCGCTCAGCCG 
GAGGCCTCCCATGTGCCTGGACGACCCGACCCATTCCCGACGTGA