ViewGene
Locus Name:
GeneID:
Location:

GeneID:2858
TrivialName: PA14_39190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39190
PAO1 Ortholog Locus:PA1959
Sequence Length:834
Protein Length:277
Start: 3491037
Stop: 3490204
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05347.1|AE004622_9 (AE004622) bacitracin resistance protein [Pseudomonas aeruginosa PAO1]
Identities = 272/277 (98%), Positives = 275/277 (99%)
Sequence:
ATGGAGTGGTGGACTGCTTTCCAGGCGTTCATCCTGGGCGTCGTGGAAGGGCTGACCGAGTTCCTGCCGATT
TCCAGCACCGGGCACCAGATCATCGTCGCCGACCTCATCGGCTTCGGCGGCGAACGCGCCAAGGCGTTCAAC
ATCATCATCCAGCTGGCGGCGATCCTCGCTGTCGTCTGGGAGTTTCGTGGAAAGATCTTTCAAGTCGTCCGT
GACCTGCCGAGCCAGCGCCAGGCCCAGCGTTTCACCGCCAACCTGCTGATCGCGTTCTTCCCGGCGGTAGTC
CTCGGCGTCCTGTTCGCCGACCTGATCCACGAGTGGCTGTTCAATCCGATCACCGTCGCCCTGGCGCTGGTG
GTGGGCGGGGTGGTCATGCTCTGGGCCGAGCGCCGGAAGCATGTGATCCACGCCGAACACGTCGACGACATG
ACCTGGAAGGACGCCCTGAAGATCGGCTGTGCCCAGTGCCTGGCGATGGTCCCCGGCACCTCGCGGTCCGGC
GCGACCATCATCGGCGGCCTGCTGTTCGGCCTTTCGCGCAAGGCGGCCACCGAGTTCTCGTTCTTCCTGGCG
ATGCCGACCATGGTCGGCGCCGCGGTCTATTCCGGCTACAAGTACCGCGACCTGTTCCGCCCCGAAGACCTG
CCGGTGTTCGCCGTCGGCTTCGTCACCTCGTTCGTCTTCGCCATGGTGGCGGTGCGTGCCTTGCTGAAGTTC
ATCGGCAACCACAGCTACGCGGCTTTCGCCTGGTATCGGATCGCCTTCGGGCTGCTGATCCTGGCGACCTGG
CAATTCCACCTGATCGACTGGAGCACCGCCGGCGAAATGTGA
Translation:
MEWWTAFQAFILGVVEGLTEFLPISSTGHQIIVADLIGFGGERAKAFNIIIQLAAILAVVWEFRGKIFQVVR
DLPSQRQAQRFTANLLIAFFPAVVLGVLFADLIHEWLFNPITVALALVVGGVVMLWAERRKHVIHAEHVDDM
TWKDALKIGCAQCLAMVPGTSRSGATIIGGLLFGLSRKAATEFSFFLAMPTMVGAAVYSGYKYRDLFRPEDL
PVFAVGFVTSFVFAMVAVRALLKFIGNHSYAAFAWYRIAFGLLILATWQFHLIDWSTAGEM*
AnnotationID:2866GeneID:2858
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 16:04:44
Gene Name:bacA
Confidence Code:2
GeneProduct:bacitracin resistance protein
Cell Localization:()
Synonyms:upk
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:undecaprenol kinase
Functional Category Confidence Code:5
COGs:COG1968,pfam02673
Secondary Functional Category(ies):adaptation, protection
EC Number:2.7.1.66
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68470.1|AE016479_10 (AE016784) bacitracin resistance protein BacA/undecaprenol kinase,
           putative [Pseudomonas putida KT2440]
          Length = 277

 Score =  466 bits (1199), Expect = e-131
 Identities = 230/274 (83%), Positives = 250/274 (91%)

>emb|CAD83950.1| (BX321856) Bacitracin resistance protein BacA [Nitrosomonas
           europaea ATCC 19718]
          Length = 273

 Score =  332 bits (850), Expect = 2e-90
 Identities = 156/272 (57%), Positives = 205/272 (75%), Gaps = 1/272 (0%)

>emb|CAD14231.1| (AL646060) BACITRACIN RESISTANCE PUTATIVE UNDECAPRENOL KINASE
           TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 293

 Score =  293 bits (750), Expect = 7e-79
 Identities = 148/286 (51%), Positives = 188/286 (65%), Gaps = 20/286 (6%)






 
Structural Features:
COG1968, BacA, Uncharacterized bacitracin resistance protein 
[Defense mechanisms]
CD-Length = 270 residues, 100.0% aligned
Score =  283 bits (726), Expect = 2e-77
Identities = 131/271 (48%), Positives = 178/271 (65%), Gaps = 5/271 (1%)

pfam02673, BacA, Bacitracin resistance protein BacA. Bacitracin resistance 
protein (BacA) is a putative undecaprenol kinase.
CD-Length = 256 residues, 100.0% aligned
Score =  256 bits (657), Expect = 2e-69
Identities = 123/257 (47%), Positives = 174/257 (67%), Gaps = 5/257 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5719




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22862




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32765




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2858_cdd.html


    		




 
URL:

















    ReferenceID:34360




  
Author/Investigator(s):
        Tomita H, Fujimoto S, Tanimoto K, Ike Y.





  
Title:
        Cloning and genetic and sequence analyses of the bacteriocin 21 determinant encoded on the Enterococcus faecalis pheromone-responsive conjugative plasmid pPD1.




  
PubMed:
        9401046


MedLine:
        




    
Source:
J Bacteriol. 1997 Dec;179(24):7843-55.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9401046

















    ReferenceID:34361




  
Author/Investigator(s):
        Tomita H, Fujimoto S, Tanimoto K, Ike Y.





  
Title:
        Cloning and genetic organization of the bacteriocin 31 determinant encoded on the Enterococcus faecalis pheromone-responsive conjugative plasmid pYI17.




  
PubMed:
        8655558


MedLine:
        




    
Source:
J Bacteriol. 1996 Jun;178(12):3585-93.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8655558









           
Homologs By Global Alignment 

           

       



     
Gene ID:2858
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4638
                           PA1959_tr
                           translation of PA1959
                           277
                           98.19
                           99.27
                           0
                           1407.0
     

     
     
133719
                           gb|AAG05347.1|AE004622_9
                           (AE004622) bacitracin resistance protein [Pseudomonas aeruginosa PAO1]
                           277
                           98.19
                           99.27
                           0
                           1407.0
     

     
     
133720
                           gb|AAN68470.1|AE016479_10
                           (AE016784) bacitracin resistance protein BacA/undecaprenol kinase, putative [Pseudomonas putida KT2440]
                           279
                           82.79
                           89.96
                           4
                           1195.0
     

     
     
133721
                           gb|AAO56628.1|
                           (AE016867) undecaprenol kinase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           277
                           80.86
                           87.36
                           1
                           1158.0
     

     
     
133722
                           emb|CAD83950.1|
                           (BX321856) Bacitracin resistance protein BacA [Nitrosomonas europaea ATCC 19718]
                           277
                           56.31
                           73.64
                           4
                           850.0
     

     






      

          
GC ORFID: 45860How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1959Glimmer Score: 

          
Start: 1462874Stop: 1463707

          
Length: 834


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1959 translation of PA1959Homolog Bit Score 546.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7251 (ORF: BLASTX 450.0), t_PA1959 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGTGGTGGACTGCTTTCCAGGCGTTCATCCTGGGCGTCGTGGAAGGGCTGACCGAGTTCCTGCCGATT 
TCCAGCACCGGGCACCAGATCATCGTCGCCGACCTCATCGGCTTCGGCGGCGAACGCGCCAAGGCGTTCAAC 
ATCATCATCCAGCTGGCGGCGATCCTCGCTGTCGTCTGGGAGTTTCGTGGAAAGATCTTTCAAGTCGTCCGT 
GACCTGCCGAGCCAGCGCCAGGCCCAGCGTTTCACCGCCAACCTGCTGATCGCGTTCTTCCCGGCGGTAGTC 
CTCGGCGTCCTGTTCGCCGACCTGATCCACGAGTGGCTGTTCAATCCGATCACCGTCGCCCTGGCGCTGGTG 
GTGGGCGGGGTGGTCATGCTCTGGGCCGAGCGCCGGAAGCATGTGATCCACGCCGAACACGTCGACGACATG 
ACCTGGAAGGACGCCCTGAAGATCGGCTGTGCCCAGTGCCTGGCGATGGTCCCCGGCACCTCGCGGTCCGGC 
GCGACCATCATCGGCGGCCTGCTGTTCGGCCTTTCGCGCAAGGCGGCCACCGAGTTCTCGTTCTTCCTGGCG 
ATGCCGACCATGGTCGGCGCCGCGGTCTATTCCGGCTACAAGTACCGCGACCTGTTCCGCCCCGAAGACCTG 
CCGGTGTTCGCCGTCGGCTTCGTCACCTCGTTCGTCTTCGCCATGGTGGCGGTGCGTGCCTTGCTGAAGTTC 
ATCGGCAACCACAGCTACGCGGCTTTCGCCTGGTATCGGATCGCCTTCGGGCTGCTGATCCTGGCGACCTGG 
CAATTCCACCTGATCGACTGGAGCACCGCCGGCGAAATGTGA