ViewGene
Locus Name:
GeneID:
Location:

GeneID:2857
TrivialName: PA14_38950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38950
PAO1 Ortholog Locus:PA1977
Sequence Length:864
Protein Length:287
Start: 3470319
Stop: 3471182
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05365.1|AE004624_4 (AE004624) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 287/287 (100%), Positives = 287/287 (100%)
Sequence:
ATGCCCGACCGCCGTACCCTGCTGCTCACTGTCCTGGCGATGCTGGCCTTCGCCGGCAATTCGCTGCTCTGC
CGCGCGGCGCTGAAGGACACCGCCATCGACGCGGTCAGCTTCACCGCCCTGCGTCTCTTCTCCGGCGCCCTC
ATGCTCGCCGTCCTGCTGCATCTGCGCCGGCGCCCGGCCACGCCCGCGCGCGGCGGCTGGCGCGGGGCGGCG
GCGCTGTTCGTCTACGCGGCCGCGTTCTCCTACGCCTACGTGCAGCTGGACGCCGGCACCGGCGCGCTGCTG
CTGTTCGGCGCGGTGCAGGTCACCCTGCTGCTGGCCGGCCTGCTGCGCGGCGAACGGCTGGGCGGACAGGCG
CTGCTCGGTTTCCTGCTGGCCCTGGGCGGCCTGCTGTTCCTGTTGCTCCCCGGAGCCAGCGCGCCGCCGCTG
GGCGGTGCCCTGCTGATGCTCCTGTCCGGCCTCGCCTGGGGCCTCTATACCCTGCTCGGCCGCGGCGGCGGC
GATCCGCTGGCGGTCAGCGCCGGCAACTTCCTCCGAGCCCTTGCCTTCGCCGCCCTGCTGCTCCTGGCATTC
CATGGGCAGTTGCGGCTGGACGGCGCCGGGCTGGcCTACGCCCTGCTTTCCGGCGCCCTCGCCTCCGGCCTC
GGCTACGCCGTCTGGTACAGCGCACTGCCGGGGCTGACGGCGATCCAGGGCGCCTCGGTGCAGCTCAGCGTG
CCGGTGCTCGCCGCCCTCTGCGGCGCCCTGTTGCTCGGCGAGCCGCTCGCCCCGCGATTGCCGCCGGCGACC
CTGGCGGTGCTCGGCGGGATCGCCCTGATCCTCGCCCCGCGCCTGGGCCGCGCGGCGCGCGAAGGCGCCTGA
Translation:
MPDRRTLLLTVLAMLAFAGNSLLCRAALKDTAIDAVSFTALRLFSGALMLAVLLHLRRRPATPARGGWRGAA
ALFVYAAAFSYAYVQLDAGTGALLLFGAVQVTLLLAGLLRGERLGGQALLGFLLALGGLLFLLLPGASAPPL
GGALLMLLSGLAWGLYTLLGRGGGDPLAVSAGNFLRALAFAALLLLAFHGQLRLDGAGLAYALLSGALASGL
GYAVWYSALPGLTAIQGASVQLSVPVLAALCGALLLGEPLAPRLPPATLAVLGGIALILAPRLGRAAREGA*
AnnotationID:2865GeneID:2857
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 16:04:39
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane protein
Cell Localization:()
Synonyms:PA1977
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD17861.1| (AL646080) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 303

 Score =  292 bits (748), Expect = 1e-78
 Identities = 156/277 (56%), Positives = 195/277 (70%)

>gb|AAO57720.1| (AE016871) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 295

 Score =  290 bits (743), Expect = 5e-78
 Identities = 152/282 (53%), Positives = 203/282 (71%), Gaps = 1/282 (0%)

>gb|AAN69122.1|AE016546_3 (AE016787) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 290

 Score =  271 bits (694), Expect = 2e-72
 Identities = 158/283 (55%), Positives = 191/283 (67%), Gaps = 6/283 (2%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5717




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22860




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32748




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2857_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2857
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4637
                           PA1977_tr
                           translation of PA1977
                           287
                           99.99
                           99.99
                           0
                           1408.0
     

     
     
133710
                           gb|AAG05365.1|AE004624_4
                           (AE004624) hypothetical protein PA1977 [Pseudomonas aeruginosa PAO1]
                           287
                           99.99
                           99.99
                           0
                           1408.0
     

     
     
133711
                           gb|AAK50294.1|U66917_62
                           (U66917) hypothetical protein [Pseudomonas sp. ADP]
                           321
                           58.25
                           66.66
                           40
                           846.0
     

     
     
133714
                           gb|AAN69122.1|AE016546_3
                           (AE016787) membrane protein, putative [Pseudomonas putida KT2440]
                           299
                           52.84
                           63.87
                           21
                           699.0
     

     
     
133712
                           emb|CAD17861.1|
                           (AL646080) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           305
                           52.13
                           65.24
                           20
                           740.0
     

     






      

          
GC ORFID: 45859How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1977Glimmer Score: 

          
Start: 1483592Stop: 1482729

          
Length: 864


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1977 translation of PA1977Homolog Bit Score 546.0

          
Other Homologs:  t_PA1977 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGACCGCCGTACCCTGCTGCTCACTGTCCTGGCGATGCTGGCCTTCGCCGGCAATTCGCTGCTCTGC 
CGCGCGGCGCTGAAGGACACCGCCATCGACGCGGTCAGCTTCACCGCCCTGCGTCTCTTCTCCGGCGCCCTC 
ATGCTCGCCGTCCTGCTGCATCTGCGCCGGCGCCCGGCCACGCCCGCGCGCGGCGGCTGGCGCGGGGCGGCG 
GCGCTGTTCGTCTACGCGGCCGCGTTCTCCTACGCCTACGTGCAGCTGGACGCCGGCACCGGCGCGCTGCTG 
CTGTTCGGCGCGGTGCAGGTCACCCTGCTGCTGGCCGGCCTGCTGCGCGGCGAACGGCTGGGCGGACAGGCG 
CTGCTCGGTTTCCTGCTGGCCCTGGGCGGCCTGCTGTTCCTGTTGCTCCCCGGAGCCAGCGCGCCGCCGCTG 
GGCGGTGCCCTGCTGATGCTCCTGTCCGGCCTCGCCTGGGGCCTCTATACCCTGCTCGGCCGCGGCGGCGGC 
GATCCGCTGGCGGTCAGCGCCGGCAACTTCCTCCGAGCCCTTGCCTTCGCCGCCCTGCTGCTCCTGGCATTC 
CATGGGCAGTTGCGGCTGGACGGCGCCGGGCTGGcCTACGCCCTGCTTTCCGGCGCCCTCGCCTCCGGCCTC 
GGCTACGCCGTCTGGTACAGCGCACTGCCGGGGCTGACGGCGATCCAGGGCGCCTCGGTGCAGCTCAGCGTG 
CCGGTGCTCGCCGCCCTCTGCGGCGCCCTGTTGCTCGGCGAGCCGCTCGCCCCGCGATTGCCGCCGGCGACC 
CTGGCGGTGCTCGGCGGGATCGCCCTGATCCTCGCCCCGCGCCTGGGCCGCGCGGCGCGCGAAGGCGCCTGA