ViewGene
Locus Name:
GeneID:
Location:

GeneID:2856
TrivialName: PA14_02330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02330
PAO1 Ortholog Locus:PA0184
Sequence Length:840
Protein Length:279
Start: 209321
Stop: 208482
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03574.1|AE004456_5 (AE004456) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 277/279 (99%), Positives = 278/279 (99%)
Sequence:
ATGAACGCATTCACCGCACCCGCCACGGGCACCCCGCTGGTCAGCTTCCGCCAGGTGCGCAAGCACTTCGCC
GTGGACGGCCGGCGACTGGAAGCGATCCAGCAGTTCGACCTGGAGATCGGCGAGGGCGAGTTCATCGCCATC
GTCGGCGCCAGCGGCTGCGGCAAGTCGACCCTGCTGCGCCTGCTGATCGGCCTGGACCGCGACTACGACGGC
GAGATCCGCGTCGACGGCCGGCCAATCGCCGGCATCGGCGGCGAACGCGGCATCGTGTTCCAGGAGCACCGC
CTGTTCCCCTGGCTGACGGTGCAGCAGAACGTCGCCCTCGGCCTGGTCAACGAAGCCCTTGGCGAAACCGAC
AAGGCGGCGCGGATCGACGAATACATCCGCCTGGTCGGCCTGCACGGCTTCGAGCGTGCCTACCCGCACCAG
TTGTCGGGCGGCATGGCCCAGCGCGTGGCGATCGCCCGCGGCCTGGTGGCCAGCCCGCGCCTGCTGCTGCTC
GACGAGCCGTTCAGCGCCCTCGACGCACTGACCCGCCAGCAGTTGCAGGAAGAGTTGCTGGCGATCCGTCGG
CGCACCCGCATCACCACCCTGCTGGTCACCCACGACGTCGAGGAGGCGCTCTACCTGGCCGACCGGGTGGTG
GTGATGGAGCCGCGCCCGGGGCGGATCAGGCGGGTGGTCGAGGTGGACCTGGCGCACCCGCGCGAGCGCGGT
GGCTTCGACTTCCTGCGCCAGCGCGAAGCGCTGCTGCACGAACTGACCGCCGACGGCGAGTACGTCGCGCCG
CCGCCGCGACGGGTGGAAAACCTGCCCTTCGAATTCCTCGCTTGCTGA
Translation:
MNAFTAPATGTPLVSFRQVRKHFAVDGRRLEAIQQFDLEIGEGEFIAIVGASGCGKSTLLRLLIGLDRDYDG
EIRVDGRPIAGIGGERGIVFQEHRLFPWLTVQQNVALGLVNEALGETDKAARIDEYIRLVGLHGFERAYPHQ
LSGGMAQRVAIARGLVASPRLLLLDEPFSALDALTRQQLQEELLAIRRRTRITTLLVTHDVEEALYLADRVV
VMEPRPGRIRRVVEVDLAHPRERGGFDFLRQREALLHELTADGEYVAPPPRRVENLPFEFLAC*
AnnotationID:2864GeneID:2856
AnnotatorUID: danlee
Modification Date/Time: 2006-03-29 17:05:38
Gene Name:
Confidence Code:2
GeneProduct:putative BC-type transporter, ATP-binding component
Cell Localization:()
Synonyms:PA0184, atsC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1116,COG4525,COG1136
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAD31787.1|AF126201_5 (AF126201) AtsC [Pseudomonas putida]
          Length = 287

 Score =  382 bits (981), Expect = e-105
 Identities = 198/286 (69%), Positives = 225/286 (78%), Gaps = 8/286 (2%)

>emb|CAE31570.1| (BX640440) ATP-binding component of ABC transporter [Bordetella
           bronchiseptica]
          Length = 250

 Score =  243 bits (619), Expect = 1e-63
 Identities = 122/240 (50%), Positives = 171/240 (71%), Gaps = 3/240 (1%)






 
Structural Features:
COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, 
ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 248 residues,  99.2% aligned
Score =  309 bits (793), Expect = 3e-85
Identities = 137/250 (54%), Positives = 168/250 (67%), Gaps = 4/250 (1%)

COG4525, TauB, ABC-type taurine transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 259 residues,  93.8% aligned
Score =  227 bits (579), Expect = 1e-60
Identities = 109/243 (44%), Positives = 144/243 (59%), Gaps = 8/243 (3%)

COG1136, SalX, ABC-type antimicrobial peptide transport system, 
ATPase component 
[Defense mechanisms]
CD-Length = 226 residues,  99.1% aligned
Score =  186 bits (473), Expect = 3e-48
Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 13/227 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5715




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22858




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33544




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2856_cdd.html


    		




 
URL:

















    ReferenceID:35483




  
Author/Investigator(s):
        Hummerjohann J, Laudenbach S, Retey J, Leisinger T, Kertesz MA.





  
Title:
        The sulfur-regulated arylsulfatase gene cluster of Pseudomonas aeruginosa, a new member of the cys regulon.




  
PubMed:
        10715018


MedLine:
        




    
Source:
J Bacteriol. 2000 Apr;182(7):2055-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10715018









           
Homologs By Global Alignment 

           

       



     
Gene ID:2856
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4624
                           PA0184_tr
                           translation of PA0184
                           279
                           99.28
                           99.64
                           0
                           1409.0
     

     
     
133083
                           gb|AAG03574.1|AE004456_5
                           (AE004456) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           279
                           99.28
                           99.64
                           0
                           1409.0
     

     
     
133084
                           emb|CAA88424.1|
                           (Z48540) ABC-type transporter, putative ATP-binding component [Pseudomonas aeruginosa]
                           279
                           94.26
                           95.69
                           1
                           1323.0
     

     
     
133085
                           gb|AAD31787.1|AF126201_5
                           (AF126201) AtsC [Pseudomonas putida]
                           287
                           68.98
                           78.39
                           8
                           985.0
     

     
     
133086
                           emb|CAE26807.1|
                           (BX572597) sulfate ester transport system ATP-binding protein [Rhodopseudomonas palustris CGA009]
                           279
                           61.29
                           73.83
                           10
                           867.0
     

     






      

          
GC ORFID: 45858How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0184Glimmer Score: 

          
Start: 6010660Stop: 6009821

          
Length: 840


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0184 translation of PA0184Homolog Bit Score 547.0

          
Other Homologs:  t_PA2294 (ORF: BLASTX 214.0), t_PA3447 (ORF: BLASTX 191.0), psyr_15may02_Scaffold7_revised_gene7016 (ORF: BLASTX 191.0), t_PA3937 (ORF: BLASTX 189.0), t_PA2308 (ORF: BLASTX 183.0), t_PA3442 (ORF: BLASTX 179.0), t_PA3514 (ORF: BLASTX 179.0), psyr_15may02_Scaffold8_revised_gene7773 (ORF: BLASTX 179.0), psyr_15may02_Scaffold6_revised_gene6502 (ORF: BLASTX 171.0), t_PA2329 (ORF: BLASTX 166.0), psyr_15may02_Scaffold5_revised_gene6172 (ORF: BLASTX 150.0), t_PA0184 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCATTCACCGCACCCGCCACGGGCACCCCGCTGGTCAGCTTCCGCCAGGTGCGCAAGCACTTCGCC 
GTGGACGGCCGGCGACTGGAAGCGATCCAGCAGTTCGACCTGGAGATCGGCGAGGGCGAGTTCATCGCCATC 
GTCGGCGCCAGCGGCTGCGGCAAGTCGACCCTGCTGCGCCTGCTGATCGGCCTGGACCGCGACTACGACGGC 
GAGATCCGCGTCGACGGCCGGCCAATCGCCGGCATCGGCGGCGAACGCGGCATCGTGTTCCAGGAGCACCGC 
CTGTTCCCCTGGCTGACGGTGCAGCAGAACGTCGCCCTCGGCCTGGTCAACGAAGCCCTTGGCGAAACCGAC 
AAGGCGGCGCGGATCGACGAATACATCCGCCTGGTCGGCCTGCACGGCTTCGAGCGTGCCTACCCGCACCAG 
TTGTCGGGCGGCATGGCCCAGCGCGTGGCGATCGCCCGCGGCCTGGTGGCCAGCCCGCGCCTGCTGCTGCTC 
GACGAGCCGTTCAGCGCCCTCGACGCACTGACCCGCCAGCAGTTGCAGGAAGAGTTGCTGGCGATCCGTCGG 
CGCACCCGCATCACCACCCTGCTGGTCACCCACGACGTCGAGGAGGCGCTCTACCTGGCCGACCGGGTGGTG 
GTGATGGAGCCGCGCCCGGGGCGGATCAGGCGGGTGGTCGAGGTGGACCTGGCGCACCCGCGCGAGCGCGGT 
GGCTTCGACTTCCTGCGCCAGCGCGAAGCGCTGCTGCACGAACTGACCGCCGACGGCGAGTACGTCGCGCCG 
CCGCCGCGACGGGTGGAAAACCTGCCCTTCGAATTCCTCGCTTGCTGA