ViewGene
Locus Name:
GeneID:
Location:

GeneID:2855
TrivialName: PA14_63130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63130
PAO1 Ortholog Locus:PA4775
Sequence Length:861
Protein Length:286
Start: 5635122
Stop: 5635982
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08161.1|AE004891_3 (AE004891) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 271/286 (94%), Positives = 279/286 (97%)
Sequence:
ATGTCCGCCGCTCCCCTGGCCAGCGTACCGCTGGCCGTCAACGGCGCGCCCTGCCTGCTGCACCGGGTACGC
TTCCGCTCCGCCGCGGACAGCGGCGGCCTGCCGCTGCTGGCCACCCTGCGCGATCCGCAGCCGGCGCTGGCG
CTTCTGGCGCAGCGCAGCGAGCTGGGCGAAGACGCGAAACTGCCGGACACCGCCGGCGACAACGAACTGCTG
GTGATCTTCGCCAGCGCCGGCCTGCAGACCGGACACGCCTGGCGTCAGCGCCTGGAAGCCTGGATGGCCGCC
GGCGAGGACGAGCGCCAGCCACCCCTGGAAGCGCCCTCGTTCGGCGAGCGGGTGCTGTGGCGCCCCGGCCGC
GCGCTGATCATCGGCAACCCCGAACGCTGCCAGGAACTGCTCGAGGGCCTGGCCGTCTTCGCCTGGCACGAA
GGTCACCTGCGGCGCCTGGAAGACGACACCGCGGCGGCCTGGGAGCCGGCCCAGGCCGATGTCGAACTGACC
CAGCTACCGCGCCGTGCCGCCCTGCGGCGCCAGGAACATGTGAACCGGCAGGTACGACGCACTACACTCTGG
CGCATGGCCTACGCCCGCCTGGAGTCGCACCTGGAGAAGCCGCCGCTGCAACTGAACAGCGCTGTGCGCCGG
CTCTACAACGAACTGGCCATGCAGGCCGAAGTGCACGATCGCCTGGCGACCCTGGACGACCGCATCGAAGTG
CTGCAGGACCTCTACGAATTGGCCGCCGACCGCCTCGGTGAATACCGTTACTTCCGGGGCGAACTGCGGGTC
GAATGGCTGATCGTCGCCATCCTCCTGCTGGAGGCCGGCCTGAGCCTGTGGGAATTGTGGAATCACTGA
Translation:
MSAAPLASVPLAVNGAPCLLHRVRFRSAADSGGLPLLATLRDPQPALALLAQRSELGEDAKLPDTAGDNELL
VIFASAGLQTGHAWRQRLEAWMAAGEDERQPPLEAPSFGERVLWRPGRALIIGNPERCQELLEGLAVFAWHE
GHLRRLEDDTAAAWEPAQADVELTQLPRRAALRRQEHVNRQVRRTTLWRMAYARLESHLEKPPLQLNSAVRR
LYNELAMQAEVHDRLATLDDRIEVLQDLYELAADRLGEYRYFRGELRVEWLIVAILLLEAGLSLWELWNH*
AnnotationID:2863GeneID:2855
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 12:12:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4775
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5713




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22856




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37683




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2855_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2855
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4623
                           PA4775_tr
                           translation of PA4775
                           286
                           94.75
                           97.55
                           0
                           1409.0
     

     
     
133082
                           gb|AAG08161.1|AE004891_3
                           (AE004891) hypothetical protein PA4775 [Pseudomonas aeruginosa PAO1]
                           286
                           94.75
                           97.55
                           0
                           1409.0
     

     






      

          
GC ORFID: 45857How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4775Glimmer Score: 

          
Start: 4898802Stop: 4899662

          
Length: 861


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4775 translation of PA4775Homolog Bit Score 547.0

          
Other Homologs:  t_PA4775 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCCGCTCCCCTGGCCAGCGTACCGCTGGCCGTCAACGGCGCGCCCTGCCTGCTGCACCGGGTACGC 
TTCCGCTCCGCCGCGGACAGCGGCGGCCTGCCGCTGCTGGCCACCCTGCGCGATCCGCAGCCGGCGCTGGCG 
CTTCTGGCGCAGCGCAGCGAGCTGGGCGAAGACGCGAAACTGCCGGACACCGCCGGCGACAACGAACTGCTG 
GTGATCTTCGCCAGCGCCGGCCTGCAGACCGGACACGCCTGGCGTCAGCGCCTGGAAGCCTGGATGGCCGCC 
GGCGAGGACGAGCGCCAGCCACCCCTGGAAGCGCCCTCGTTCGGCGAGCGGGTGCTGTGGCGCCCCGGCCGC 
GCGCTGATCATCGGCAACCCCGAACGCTGCCAGGAACTGCTCGAGGGCCTGGCCGTCTTCGCCTGGCACGAA 
GGTCACCTGCGGCGCCTGGAAGACGACACCGCGGCGGCCTGGGAGCCGGCCCAGGCCGATGTCGAACTGACC 
CAGCTACCGCGCCGTGCCGCCCTGCGGCGCCAGGAACATGTGAACCGGCAGGTACGACGCACTACACTCTGG 
CGCATGGCCTACGCCCGCCTGGAGTCGCACCTGGAGAAGCCGCCGCTGCAACTGAACAGCGCTGTGCGCCGG 
CTCTACAACGAACTGGCCATGCAGGCCGAAGTGCACGATCGCCTGGCGACCCTGGACGACCGCATCGAAGTG 
CTGCAGGACCTCTACGAATTGGCCGCCGACCGCCTCGGTGAATACCGTTACTTCCGGGGCGAACTGCGGGTC 
GAATGGCTGATCGTCGCCATCCTCCTGCTGGAGGCCGGCCTGAGCCTGTGGGAATTGTGGAATCACTGA