ViewGene
Locus Name:
GeneID:
Location:

GeneID:2850
TrivialName: PA14_08270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08270
PAO1 Ortholog Locus:PA0639
Sequence Length:771
Protein Length:256
Start: 706286
Stop: 707056
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04028.1|AE004499_7 (AE004499) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 255/256 (99%), Positives = 255/256 (99%)
Sequence:
ATGGAACTGAGCCGCAGCTTGCAGCGGGCCATCGCCGCACACGCCGCCCGCGAGCATCCGCGCGAATGCTGC
GGGCTGATCGTTCGCGGTGTGCGTCAACGCCGCTACGTGGCCTGTCGCAACGCAGCCGGATCGCCCAGCGAG
CACTTCGTGATCGATCACCAGGACTGGTGCGCTGCCGAGGACCAGGGCGAGGTCCTGGCCATCGTCCACAGC
CACCCGGACGTTCCGGCCACGCCGAGCATGGCCGATCGGGTCAGTTGCGAACTGCATGGTCTGCCCTGGGTG
ATCCTGTCCTGGCCGGAAGGCGATGTCGCGCATCTAGCGCCGGAGGGCTATCGGGCGCCGCTGCTCGGCCGC
GAGTTCGCCCACGGCGTGCTCGACTGCTGGAGCCTCTGTCGCGACTGGTACCGCCGCGAGGCAGGTCTGGAG
CTTCCGGACTATCCGCGCCGCGACGGTTGGTGGGAAACCGGCGAGAGCCTCTACGAGCAGCACTATGCGGCG
GCTGGATTCCGGCCGGTGCCGCTGGCCGGAATCCGCCGCGGCGACATGCTGGTGATGCAGGTCGGAAGGGCG
CTGCACCCTAACCATGCGGGCATCTACCTGGGCAACGACTGGCGTCTGGACAGCGAGCCGGTCCAGGCGCTC
GGCGGCGACGGACCGTTCCTGCTGCACCACCTGTACGGACGGCTGTCGACCCGCGACGTGTTCGGCGGACCC
TGGATCGAACGCACGCGCCTGGTCTTGCGGCACATGCGGATGCCGCAGTGA
Translation:
MELSRSLQRAIAAHAAREHPRECCGLIVRGVRQRRYVACRNAAGSPSEHFVIDHQDWCAAEDQGEVLAIVHS
HPDVPATPSMADRVSCELHGLPWVILSWPEGDVAHLAPEGYRAPLLGREFAHGVLDCWSLCRDWYRREAGLE
LPDYPRRDGWWETGESLYEQHYAAAGFRPVPLAGIRRGDMLVMQVGRALHPNHAGIYLGNDWRLDSEPVQAL
GGDGPFLLHHLYGRLSTRDVFGGPWIERTRLVLRHMRMPQ*
AnnotationID:2858GeneID:2850
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:23
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0639
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1310,pfam00877
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD15397.1| (AL646065) PROBABLE PHAGE HK022 GP19-RELATED PROTEIN [Ralstonia
           solanacearum]
          Length = 236

 Score =  268 bits (684), Expect = 3e-71
 Identities = 136/243 (55%), Positives = 164/243 (67%), Gaps = 19/243 (7%)








 
Structural Features:
COG1310, Predicted metal-dependent protease of the PAD1/JAB1 superfamily
CD-Length = 134 residues,  99.3% aligned
Score =  115 bits (289), Expect = 4e-27
Identities = 54/133 (40%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

pfam00877, NlpC/P60 family
CD-Length = 106 residues, 100.0% aligned
Score = 75.3 bits (185), Expect = 6e-15
Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 36/137 (26%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5703




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22846




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34601




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2850_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2850
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4617
                           PA0639_tr
                           translation of PA0639
                           256
                           99.60
                           99.60
                           0
                           1411.0
     

     
     
132851
                           gb|AAG04028.1|AE004499_7
                           (AE004499) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           256
                           99.60
                           99.60
                           0
                           1411.0
     

     
     
132852
                           emb|CAD15397.1|
                           (AL646065) PROBABLE PHAGE HK022 GP19-RELATED PROTEIN [Ralstonia solanacearum]
                           259
                           53.28
                           64.86
                           26
                           691.0
     

     
     
132853
                           gb|AAN55961.1|AE015734_6
                           (AE015734) prophage LambdaSo, tail assembly protein K, putative [Shewanella oneidensis MR-1]
                           259
                           42.08
                           59.45
                           25
                           588.0
     

     
     
132854
                           gb|AAM85755.1|AE013823_6
                           (AE013823) putative phage tail protein [Yersinia pestis KIM]
                           259
                           40.54
                           54.82
                           26
                           490.0
     

     






      

          
GC ORFID: 45852How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0639Glimmer Score: 

          
Start: 6507629Stop: 6508399

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0639 translation of PA0639Homolog Bit Score 548.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7407 (ORF: BLASTX 278.0), t_PA0639 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACTGAGCCGCAGCTTGCAGCGGGCCATCGCCGCACACGCCGCCCGCGAGCATCCGCGCGAATGCTGC 
GGGCTGATCGTTCGCGGTGTGCGTCAACGCCGCTACGTGGCCTGTCGCAACGCAGCCGGATCGCCCAGCGAG 
CACTTCGTGATCGATCACCAGGACTGGTGCGCTGCCGAGGACCAGGGCGAGGTCCTGGCCATCGTCCACAGC 
CACCCGGACGTTCCGGCCACGCCGAGCATGGCCGATCGGGTCAGTTGCGAACTGCATGGTCTGCCCTGGGTG 
ATCCTGTCCTGGCCGGAAGGCGATGTCGCGCATCTAGCGCCGGAGGGCTATCGGGCGCCGCTGCTCGGCCGC 
GAGTTCGCCCACGGCGTGCTCGACTGCTGGAGCCTCTGTCGCGACTGGTACCGCCGCGAGGCAGGTCTGGAG 
CTTCCGGACTATCCGCGCCGCGACGGTTGGTGGGAAACCGGCGAGAGCCTCTACGAGCAGCACTATGCGGCG 
GCTGGATTCCGGCCGGTGCCGCTGGCCGGAATCCGCCGCGGCGACATGCTGGTGATGCAGGTCGGAAGGGCG 
CTGCACCCTAACCATGCGGGCATCTACCTGGGCAACGACTGGCGTCTGGACAGCGAGCCGGTCCAGGCGCTC 
GGCGGCGACGGACCGTTCCTGCTGCACCACCTGTACGGACGGCTGTCGACCCGCGACGTGTTCGGCGGACCC 
TGGATCGAACGCACGCGCCTGGTCTTGCGGCACATGCGGATGCCGCAGTGA